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HADDOCK models of active human alphaM I-domain bound to the the C-terminal domain of the cytokine pleiotrophin
Authors
Wang, X., Nguyen, H.
Assembly
Integrin alpha-M, Pleiotrophin
Entity
1. Integrin alpha-M, Pleiotrophin, entity 1 (polymer), 184 monomers, 21115.86 Da Detail

DSDIAFLIDG SGSIIPHDFR RMKEFVSTVM EQLKKSKTLF SLMQYSEEFR IHFTFKEFQN NPNPRSLVKP ITQLLGRTHT ATGIRKVVRE LFNITNGARK NAFKILVVIT DGEKFGDPLG YEDVIPEADR EGVIRYVIGV GDAFRSEKSR QELNTIASKP PRDHVFQVNN FEALKTIQNQ LREK


2. Integrin alpha-M, Pleiotrophin, entity 2 (polymer, Thiol state: all disulfide bound), 57 monomers, 6460.400 Da Detail

NWKKQFGAEC KYQFQAWGEC DLNTALKTRT GSLKRALHNA ECQKTVTISK PCGKLTK


3. Integrin alpha-M, Pleiotrophin, entity MG (non-polymer), 24.305 Da
Total weight
27600.564 Da
Max. entity weight
21115.86 Da
Entity Connection
na 4, disulfide 2 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1disulfidesing2:CYS10:SG2:CYS42:SG
2disulfidesing2:CYS20:SG2:CYS52:SG
3nasing1:SER11:OG3:MG1:MG
4nasing1:SER13:OG3:MG1:MG
5nasing1:THR78:OG13:MG1:MG
6nasing2:GLU41:OE23:MG1:MG

Source organism
Homo sapiens
Exptl. method
solution NMR
Data set
assigned_chemical_shifts, spectral_peak_list
Chemcal Shifts
1H: 367, 13C: 432, 15N: 129 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
118ILECC172.50000.00001
219ASPHH7.94100.00001
319ASPCC172.70000.00001
419ASPCAC53.70000.00001
519ASPCBC41.80000.00001
619ASPNN127.44000.00001
7110GLYHH8.80600.00001
8110GLYCC176.30000.00001
9110GLYCAC43.40000.00001
10110GLYNN112.18000.00001
11111SERHH8.79300.00001
12111SERCC174.50000.00001
13111SERCAC58.00000.00001
14111SERCBC65.50000.00001
15111SERNN117.27000.00001
16112GLYHH9.91000.00001
17112GLYCC175.10000.00001
18112GLYCAC46.30000.00001
19112GLYNN104.41000.00001
20113SERHH9.51900.00001
21113SERCC174.50000.00001
22113SERCAC59.30000.00001
23113SERCBC61.40000.00001
24113SERNN115.00000.00001
25114ILEHH7.62400.00001
26114ILECC176.40000.00001
27114ILECAC57.60000.00001
28114ILECBC33.20000.00001
29114ILENN126.95000.00001
30115ILEHH9.16500.00001
31115ILECAC60.40000.00001
32115ILECBC35.60000.00001
33115ILENN126.91000.00001
34117HISCC178.30000.00001
35118ASPHH7.45000.00001
36118ASPCC177.80000.00001
37118ASPCAC56.50000.00001
38118ASPCBC39.40000.00001
39118ASPNN118.90000.00001
40119PHEHH8.30800.00001
41119PHECC177.50000.00001
42119PHECAC62.00000.00001
43119PHECBC38.30000.00001
44119PHENN124.27000.00001
45120ARGHH8.04100.00001
46120ARGCC179.80000.00001
47120ARGCAC59.90000.00001
48120ARGCBC28.80000.00001
49120ARGNN116.39000.00001
50121ARGHH7.59600.00001
51121ARGCC178.40000.00001
52121ARGCAC59.30000.00001
53121ARGCBC28.80000.00001
54121ARGNN119.48000.00001
55122METHH8.34700.00001
56122METCC178.00000.00001
57122METCAC59.40000.00001
58122METCBC31.60000.00001
59122METNN118.57000.00001
60123LYSHH7.26600.00001
61123LYSCC178.40000.00001
62123LYSCAC60.30000.00001
63123LYSCBC30.50000.00001
64123LYSNN116.81000.00001
65124GLUHH7.41600.00001
66124GLUCC179.50000.00001
67124GLUCAC58.20000.00001
68124GLUCBC28.30000.00001
69124GLUNN119.31000.00001
70125PHEHH8.87400.00001
71125PHECAC58.90000.00001
72125PHECBC37.20000.00001
73125PHENN121.91000.00001
74156LYSCC178.50000.00001
75157GLUHH8.00500.00001
76157GLUCC180.10000.00001
77157GLUCAC59.00000.00001
78157GLUCBC29.20000.00001
79157GLUNN119.96000.00001
80158PHEHH8.73300.00001
81158PHECC176.20000.00001
82158PHECAC61.60000.00001
83158PHECBC39.30000.00001
84158PHENN120.39000.00001
85159GLNHH8.41200.00001
86159GLNCAC58.60000.00001
87159GLNCBC28.20000.00001
88159GLNNN117.16000.00001
89171ILECC176.00000.00001
90172THRHH8.22100.00001
91172THRCC173.80000.00001
92172THRCAC59.70000.00001
93172THRCBC70.70000.00001
94172THRNN120.08000.00001
95173GLNHH8.45800.00001
96173GLNCC178.20000.00001
97173GLNCAC56.10000.00001
98173GLNCBC27.30000.00001
99173GLNNN126.38000.00001
100174LEUHH9.04000.00001
101174LEUCC179.70000.00001
102174LEUCAC58.10000.00001
103174LEUCBC43.30000.00001
104174LEUNN129.66000.00001
105175LEUHH7.86500.00001
106175LEUCC174.70000.00001
107175LEUCAC57.20000.00001
108175LEUCBC39.00000.00001
109175LEUNN109.28000.00001
110176GLYHH7.83600.00001
111176GLYCAC43.40000.00001
112176GLYNN104.65000.00001
113177ARGHH8.51440.00001
114177ARGNN117.53130.00001
115194ILECC179.50000.00001
116195THRHH8.70600.00001
117195THRCC175.70000.00001
118195THRCAC65.10000.00001
119195THRCBC67.90000.00001
120195THRNN117.10000.00001
121196ASNHH7.95000.00001
122196ASNCC175.60000.00001
123196ASNCAC52.60000.00001
124196ASNCBC39.10000.00001
125196ASNNN117.60000.00001
126197GLYHH8.17300.00001
127197GLYCC173.10000.00001
128197GLYCAC45.40000.00001
129197GLYNN106.39000.00001
130198ALAHH7.14500.00001
131198ALACC177.10000.00001
132198ALACAC51.60000.00001
133198ALACBC18.30000.00001
134198ALANN121.73000.00001
135199ARGHH10.35600.00001
136199ARGCC177.90000.00001
137199ARGCAC56.20000.00001
138199ARGCBC29.50000.00001
139199ARGNN124.77000.00001
1401100LYSHH8.64900.00001
1411100LYSCAC58.00000.00001
1421100LYSCBC31.60000.00001
1431100LYSNN124.26000.00001
1441110THRCC171.60000.00001
1451111ASPHH7.17200.00001
1461111ASPCC177.50000.00001
1471111ASPCAC53.70000.00001
1481111ASPCBC40.10000.00001
1491111ASPNN124.27000.00001
1501112GLYHH7.88500.00001
1511112GLYCC171.60000.00001
1521112GLYCAC46.10000.00001
1531112GLYNN103.65000.00001
1541113GLUHH6.92300.00001
1551113GLUCC174.40000.00001
1561113GLUCAC53.70000.00001
1571113GLUCBC29.30000.00001
1581113GLUNN116.52000.00001
1591114LYSHH10.22900.00001
1601114LYSCC177.40000.00001
1611114LYSCAC59.00000.00001
1621114LYSCBC30.10000.00001
1631114LYSNN130.06000.00001
1641115PHEHH9.74300.00001
1651115PHECC174.10000.00001
1661115PHECAC59.10000.00001
1671115PHECBC40.60000.00001
1681115PHENN127.58000.00001
1691116GLYHH8.48900.00001
1701116GLYCAC44.00000.00001
1711116GLYNN115.71000.00001
1721118PROCC177.10000.00001
1731119LEUHH8.55500.00001
1741119LEUCC176.60000.00001
1751119LEUCAC52.80000.00001
1761119LEUCBC42.20000.00001
1771119LEUNN118.12000.00001
1781120GLYHH9.05700.00001
1791120GLYCC175.90000.00001
1801120GLYCAC42.60000.00001
1811120GLYNN107.71000.00001
1821121TYRHH8.83200.00001
1831121TYRCC178.50000.00001
1841121TYRCAC62.10000.00001
1851121TYRCBC36.00000.00001
1861121TYRNN120.81000.00001
1871122GLUHH10.20900.00001
1881122GLUCAC58.30000.00001
1891122GLUCBC26.90000.00001
1901122GLUNN119.38000.00001
1911126PROCC179.80000.00001
1921127GLUHH7.34200.00001
1931127GLUCC177.30000.00001
1941127GLUCAC58.90000.00001
1951127GLUCBC29.00000.00001
1961127GLUNN117.52000.00001
1971128ALAHH7.65300.00001
1981128ALACC179.00000.00001
1991128ALACAC55.20000.00001
2001128ALACBC16.70000.00001
2011128ALANN121.04000.00001
2021129ASPHH8.53000.00001
2031129ASPCC180.50000.00001
2041129ASPCAC56.90000.00001
2051129ASPCBC39.20000.00001
2061129ASPNN116.80000.00001
2071130ARGHH8.38000.00001
2081130ARGCC178.70000.00001
2091130ARGCAC58.90000.00001
2101130ARGNN123.00000.00001
2111131GLUHH7.71400.00001
2121131GLUCC176.80000.00001
2131131GLUCAC55.30000.00001
2141131GLUCBC29.00000.00001
2151131GLUNN115.46000.00001
2161132GLYHH7.74300.00001
2171132GLYCC174.10000.00001
2181132GLYCAC46.00000.00001
2191132GLYNN107.54000.00001
2201133VALHH7.79800.00001
2211133VALCAC61.80000.00001
2221133VALCBC30.80000.00001
2231133VALNN119.45000.00001
2241140VALCC175.50000.00001
2251141GLYHH8.57400.00001
2261141GLYCC176.40000.00001
2271141GLYCAC46.50000.00001
2281141GLYNN108.60000.00001
2291142ASPHH9.30900.00001
2301142ASPCC177.10000.00001
2311142ASPCAC54.60000.00001
2321142ASPCBC39.70000.00001
2331142ASPNN127.57000.00001
2341143ALAHH7.58900.00001
2351143ALACC178.40000.00001
2361143ALACAC55.20000.00001
2371143ALACBC19.60000.00001
2381143ALANN121.26000.00001
2391144PHEHH8.68100.00001
2401144PHECC177.10000.00001
2411144PHECAC58.90000.00001
2421144PHECBC37.20000.00001
2431144PHENN109.21000.00001
2441145ARGHH8.10100.00001
2451145ARGCC175.60000.00001
2461145ARGCAC56.80000.00001
2471145ARGCBC30.10000.00001
2481145ARGNN119.31000.00001
2491146SERHH7.19500.00001
2501146SERCC173.70000.00001
2511146SERCAC55.90000.00001
2521146SERCBC65.00000.00001
2531146SERNN111.55000.00001
2541147GLUHH8.99200.00001
2551147GLUCAC59.10000.00001
2561147GLUCBC28.70000.00001
2571147GLUNN125.56000.00001
2581148LYSCC179.40000.00001
2591149SERHH7.63600.00001
2601149SERCC177.20000.00001
2611149SERCAC60.20000.00001
2621149SERCBC62.00000.00001
2631149SERNN115.17000.00001
2641150ARGHH8.11400.00001
2651150ARGCAC60.40000.00001
2661150ARGCBC29.30000.00001
2671150ARGNN123.41000.00001
2681151GLNCC179.30000.00001
2691152GLUHH7.90200.00001
2701152GLUCC178.70000.00001
2711152GLUCAC61.30000.00001
2721152GLUCBC27.60000.00001
2731152GLUNN123.10000.00001
2741153LEUHH7.80000.00001
2751153LEUCC178.70000.00001
2761153LEUCAC58.00000.00001
2771153LEUCBC38.40000.00001
2781153LEUNN115.19000.00001
2791154ASNHH7.43000.00001
2801154ASNCC176.40000.00001
2811154ASNCAC55.00000.00001
2821154ASNCBC37.00000.00001
2831154ASNNN114.10000.00001
2841155THRHH7.94100.00001
2851155THRCC175.30000.00001
2861155THRCAC65.50000.00001
2871155THRCBC68.10000.00001
2881155THRNN116.96000.00001
2891156ILEHH7.29100.00001
2901156ILECC175.20000.00001
2911156ILECAC63.50000.00001
2921156ILECBC38.30000.00001
2931156ILENN120.46000.00001
2941157ALAHH7.16300.00001
2951157ALACC178.10000.00001
2961157ALACAC52.10000.00001
2971157ALACBC20.10000.00001
2981157ALANN119.77000.00001
2991158SERHH8.25300.00001
3001158SERNN119.06000.00001
3011164HISCC171.60000.00001
3021165VALHH6.97200.00001
3031165VALCC175.30000.00001
3041165VALCAC61.30000.00001
3051165VALCBC32.50000.00001
3061165VALNN119.77000.00001
3071166PHEHH9.38200.00001
3081166PHECC173.70000.00001
3091166PHECAC56.60000.00001
3101166PHECBC42.80000.00001
3111166PHENN124.31000.00001
3121167GLNHH8.47000.00001
3131167GLNCAC54.30000.00001
3141167GLNCBC30.80000.00001
3151167GLNNN121.00000.00001
3161179ASNCC177.50000.00001
3171180GLNHH8.28900.00001
3181180GLNCC179.10000.00001
3191180GLNCAC58.70000.00001
3201180GLNCBC27.80000.00001
3211180GLNNN119.20000.00001
3221181LEUHH8.33000.00001
3231181LEUCC178.50000.00001
3241181LEUCAC57.90000.00001
3251181LEUCBC40.80000.00001
3261181LEUNN119.10000.00001
3271182ARGHH8.27300.00001
3281182ARGCC178.20000.00001
3291182ARGCAC59.50000.00001
3301182ARGCBC29.60000.00001
3311182ARGNN118.23000.00001
3321183GLUHH7.85900.00001
3331183GLUCAC58.80000.00001
3341183GLUCBC28.90000.00001
3351183GLUNN116.77000.00001
33621ASNHH8.55100.00001
33721ASNHAH4.62000.00001
33821ASNHB2H2.78000.00002
33921ASNHD21H6.88000.00002
34021ASNHD22H7.64000.00002
34121ASNCC175.12900.00001
34221ASNCAC53.83200.00001
34321ASNCBC38.63400.00001
34421ASNNN120.91800.00001
34521ASNND2N113.40000.00001
34622TRPHH8.01000.00001
34722TRPHAH4.60400.00001
34822TRPHB2H3.29000.00002
34922TRPHB3H3.20000.00002
35022TRPHD1H7.28000.00001
35122TRPHE1H10.20000.00001
35222TRPHE3H7.50000.00001
35322TRPHZ2H7.45000.00001
35422TRPHZ3H7.02000.00001
35522TRPHH2H7.14000.00001
35622TRPCC176.37400.00001
35722TRPCAC57.60500.00001
35822TRPCBC29.48700.00001
35922TRPCD1C127.30000.00001
36022TRPCE3C120.90000.00001
36122TRPCZ2C114.70000.00001
36222TRPCZ3C122.00000.00001
36322TRPCH2C124.60000.00001
36422TRPNN121.79100.00001
36522TRPNE1N129.80000.00001
36623LYSHH7.75100.00001
36723LYSHAH4.07000.00001
36823LYSHB2H1.65000.00002
36923LYSHG2H0.98000.00002
37023LYSHD2H1.50100.00002
37123LYSHE2H2.80200.00002
37223LYSCC176.68500.00001
37323LYSCAC56.92600.00001
37423LYSCBC32.87700.00001
37523LYSCGC24.56000.00001
37623LYSCDC29.00000.00001
37723LYSCEC42.18000.00001
37823LYSNN122.28900.00001
37924LYSHH7.96300.00001
38024LYSHAH4.16000.00001
38124LYSHB2H1.71000.00002
38224LYSHG2H1.35000.00002
38324LYSHD2H1.52000.00002
38424LYSHE2H2.95000.00002
38524LYSCC176.73100.00001
38624LYSCAC56.80400.00001
38724LYSCBC32.91000.00001
38824LYSCGC24.77000.00001
38924LYSCDC29.21000.00001
39024LYSCEC42.28000.00001
39124LYSNN121.69100.00001
39225GLNHH8.17700.00001
39325GLNHAH4.24000.00001
39425GLNHB2H1.92000.00002
39525GLNHG2H2.18000.00002
39625GLNCC175.69600.00001
39725GLNCAC56.41600.00001
39825GLNCBC29.72200.00001
39925GLNCGC33.64000.00001
40025GLNNN120.61100.00001
40126PHEHH7.99000.00001
40226PHEHAH4.75000.00001
40326PHEHB2H3.08000.00002
40426PHEHB3H3.30000.00002
40526PHEHD1H7.27000.00003
40626PHEHE1H7.32000.00003
40726PHECC175.95800.00001
40826PHECAC57.33900.00001
40926PHECBC39.81300.00001
41026PHECD1C132.10000.00003
41126PHECE1C131.30000.00003
41226PHENN119.96400.00001
41327GLYHH8.42700.00001
41427GLYHA2H4.03400.00002
41527GLYCC174.29700.00001
41627GLYCAC45.30600.00001
41727GLYNN110.67400.00001
41828ALAHH8.31600.00001
41928ALAHAH4.26000.00001
42028ALAHB1H1.41000.00001
42128ALAHB2H1.41000.00001
42228ALAHB3H1.41000.00001
42328ALACC178.02800.00001
42428ALACAC53.40000.00001
42528ALACBC19.37200.00001
42628ALANN124.21300.00001
42729GLUHH8.69700.00001
42829GLUHAH4.24000.00001
42929GLUHB2H1.89000.00002
43029GLUHG2H2.25000.00002
43129GLUCC175.12700.00001
43229GLUCAC57.20500.00001
43329GLUCBC29.92400.00001
43429GLUCGC36.35000.00001
43529GLUNN117.48900.00001
436210CYSHH7.75800.00001
437210CYSHAH4.31000.00001
438210CYSHB2H3.03000.00002
439210CYSCC172.43600.00001
440210CYSCAC53.30000.00001
441210CYSCBC41.12200.00001
442210CYSNN119.30500.00001
443211LYSHH8.17400.00001
444211LYSHAH4.68000.00001
445211LYSHB2H1.66000.00002
446211LYSHG2H1.27000.00002
447211LYSHG3H1.31000.00002
448211LYSHE2H2.88000.00002
449211LYSCC174.80400.00001
450211LYSCAC54.00900.00001
451211LYSCBC33.65100.00001
452211LYSCGC24.11000.00001
453211LYSCDC28.44000.00001
454211LYSCEC44.31000.00001
455211LYSNN123.24800.00001
456212TYRHH8.76900.00001
457212TYRHAH4.41000.00001
458212TYRHB2H2.74000.00002
459212TYRHB3H2.85000.00002
460212TYRHD1H6.40000.00003
461212TYRHE1H6.36000.00003
462212TYRCC174.60200.00001
463212TYRCAC58.20400.00001
464212TYRCBC42.10000.00001
465212TYRCD1C132.10000.00003
466212TYRCE1C117.80000.00003
467212TYRNN122.63500.00001
468213GLNHH8.57300.00001
469213GLNHAH4.59000.00001
470213GLNHB2H1.81000.00002
471213GLNHB3H1.99000.00002
472213GLNHG2H2.20300.00002
473213GLNCC175.63400.00001
474213GLNCAC54.10800.00001
475213GLNCBC29.90000.00001
476213GLNCGC33.45000.00001
477213GLNNN120.98400.00001
478214PHEHH9.25500.00001
479214PHEHAH4.97000.00001
480214PHEHB2H2.69000.00002
481214PHEHB3H2.85000.00002
482214PHEHD1H6.88000.00003
483214PHECC177.14900.00001
484214PHECAC58.97600.00001
485214PHECBC40.83700.00001
486214PHECD1C129.60000.00003
487214PHENN127.38900.00001
488215GLNHH8.27300.00001
489215GLNHAH4.44000.00001
490215GLNHB2H1.92000.00002
491215GLNHB3H2.04000.00002
492215GLNHG2H2.44000.00002
493215GLNHG3H2.21000.00002
494215GLNCC176.72100.00001
495215GLNCAC54.70700.00001
496215GLNCBC29.98300.00001
497215GLNCGC34.70000.00001
498215GLNNN121.51400.00001
499216ALAHH8.29300.00001
500216ALAHAH4.22000.00001
501216ALAHB1H1.46000.00001
502216ALAHB2H1.46000.00001
503216ALAHB3H1.46000.00001
504216ALACC178.77600.00001
505216ALACAC52.75100.00001
506216ALACBC19.55900.00001
507216ALANN122.41400.00001
508217TRPHH8.13600.00001
509217TRPHAH4.26000.00001
510217TRPHB2H3.13000.00002
511217TRPHB3H3.28000.00002
512217TRPHE1H10.20000.00001
513217TRPHZ2H7.34000.00001
514217TRPHZ3H7.03000.00001
515217TRPHH2H6.75000.00001
516217TRPCC178.29000.00001
517217TRPCAC58.98200.00001
518217TRPCBC30.63300.00001
519217TRPCZ2C114.70000.00001
520217TRPCZ3C123.40000.00001
521217TRPCH2C124.40000.00001
522217TRPNN120.41200.00001
523217TRPNE1N129.80000.00001
524218GLYHH8.76300.00001
525218GLYHA2H4.16000.00002
526218GLYHA3H4.42000.00002
527218GLYCC177.70000.00001
528218GLYCAC44.28700.00001
529218GLYNN109.88100.00001
530219GLUHH8.40000.00001
531219GLUHAH4.23000.00001
532219GLUHB2H1.96000.00002
533219GLUHB3H2.06000.00002
534219GLUHG2H2.37000.00002
535219GLUCC177.77000.00001
536219GLUCAC55.70000.00001
537219GLUCBC30.60000.00001
538219GLUCGC36.11000.00001
539219GLUNN116.90000.00001
540220CYSHH8.98000.00001
541220CYSHAH4.15000.00001
542220CYSHB2H2.79000.00002
543220CYSHB3H2.94000.00002
544220CYSCC174.11700.00001
545220CYSCAC56.70600.00001
546220CYSCBC41.05600.00001
547220CYSNN121.84600.00001
548221ASPHH8.27900.00001
549221ASPHAH4.68000.00001
550221ASPHB2H2.64000.00002
551221ASPCC176.89000.00001
552221ASPCAC53.49200.00001
553221ASPCBC41.81900.00001
554221ASPNN131.72800.00001
555222LEUHH8.76300.00001
556222LEUHAH3.99000.00001
557222LEUHB2H1.65000.00002
558222LEUHB3H1.68000.00002
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Release date
2024-05-09
Citation
NMR structure of alphaM I-domain of integrin Mac-1 in complex with the Cytokine Pleiotrophin
Wang, X., Nguyen, H.
Related entities 1. Integrin alpha-M, Pleiotrophin, entity 1, : 1 : 16 : 6 : 381 entities Detail
Related entities 2. Integrin alpha-M, Pleiotrophin, entity 2, : 4 : 6 : 23 entities Detail
Interaction partners 1. Integrin alpha-M, Pleiotrophin, entity 1, : 1 interactors Detail
Interaction partners 2. Integrin alpha-M, Pleiotrophin, entity 2, : 88 interactors Detail
Experiments performed 5 experiments Detail
Chemical shift validation 5 contents Detail
Keywords CELL ADHESION, Mac-1, integrin, pleiotrophin