BMRB: 34499

2'-F-riboguanosine and LNA modified hybrid type G-quadruplex with V-loop

Authors

Weisz, K., Haase, L.

Assembly

DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*(GF2))-R(P*(LCG))-D(P*GP*GP*AP*CP*GP*GP*G)-3')

Entity

1. DNA (5'-D(*GP*GP*GP*AP*TP*GP*GP*GP*AP*CP*AP*CP*AP*(GF2))-R(P*(LCG))-D(P*GP*GP*AP*CP*GP*GP*G)-3') (polymer, Thiol state: not present), 22 monomers, 7081.462 Da Detail

GGGATGGGAC ACAXXGGACG GG

Formula weight

7081.462 Da

Source organism

synthetic construct

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chemcal Shifts

¹H: 113, ¹³C: 21 assignments Detail

Download

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ID	Entity ID	Seq ID	Comp ID	Atom ID	Atom type	Val	Val err	Ambig. code
1	1	1	DG	H1	H	11.827	0.002	1
2	1	1	DG	H1'	H	5.809	0.002	1
3	1	1	DG	H2'	H	2.550	0.004	1
4	1	1	DG	H2''	H	2.662	0.002	1
5	1	1	DG	H3'	H	4.907	0.001	1
6	1	1	DG	H8	H	7.238	0.002	1
7	1	1	DG	C8	C	140.972		1
8	1	2	DG	H1	H	11.652	0.002	1
9	1	2	DG	H1'	H	5.877	0.003	1
10	1	2	DG	H2'	H	2.422	0.003	1
11	1	2	DG	H2''	H	2.593	0.002	1
12	1	2	DG	H3'	H	4.987	0.0	1
13	1	2	DG	H8	H	7.489	0.001	1
14	1	2	DG	C8	C	137.183		1
15	1	3	DG	H1'	H	5.861	0.004	1
16	1	3	DG	H2'	H	2.578	0.008	2
17	1	3	DG	H2''	H	2.515	0.004	2
18	1	3	DG	H3'	H	4.835	0.003	1
19	1	3	DG	H8	H	7.942	0.002	1
20	1	3	DG	C8	C	139.470		1
21	1	4	DA	H1'	H	6.021	0.002	1
22	1	4	DA	H2	H	7.790	0.0	1
23	1	4	DA	H2'	H	2.375	0.006	1
24	1	4	DA	H2''	H	2.375	0.006	1
25	1	4	DA	H3'	H	4.737	0.004	1
26	1	4	DA	H8	H	7.976	0.001	1
27	1	4	DA	C8	C	141.758		1
28	1	5	DT	H1'	H	5.852	0.004	1
29	1	5	DT	H2'	H	1.892	0.002	1
30	1	5	DT	H2''	H	2.301	0.002	1
31	1	5	DT	H3'	H	4.632	0.004	1
32	1	5	DT	H6	H	7.240	0.002	1
33	1	5	DT	H71	H	1.527	0.003	1
34	1	5	DT	H72	H	1.527	0.003	1
35	1	5	DT	H73	H	1.527	0.003	1
36	1	5	DT	C6	C	139.167		1
37	1	6	DG	H1	H	11.530	0.001	1
38	1	6	DG	H1'	H	5.959	0.002	1
39	1	6	DG	H2'	H	3.442	0.002	1
40	1	6	DG	H2''	H	2.873	0.002	1
41	1	6	DG	H3'	H	4.860	0.004	1
42	1	6	DG	H8	H	7.269	0.002	1
43	1	6	DG	C8	C	142.013		1
44	1	7	DG	H1	H	11.750	0.003	1
45	1	7	DG	H1'	H	5.980	0.002	1
46	1	7	DG	H2'	H	2.623	0.002	1
47	1	7	DG	H2''	H	2.875	0.001	1
48	1	7	DG	H3'	H	5.035	0.009	1
49	1	7	DG	H8	H	8.018	0.001	1
50	1	7	DG	C8	C	138.376		1
51	1	8	DG	H1	H	11.300	0.002	1
52	1	8	DG	H1'	H	5.963	0.004	1
53	1	8	DG	H2'	H	2.007	0.002	1
54	1	8	DG	H2''	H	2.465		1
55	1	8	DG	H3'	H	4.902	0.003	1
56	1	8	DG	H8	H	7.407	0.001	1
57	1	8	DG	C8	C	137.627		1
58	1	10	DC	H5	H	5.983		1
59	1	10	DC	H6	H	7.648	0.003	1
60	1	10	DC	C6	C	143.768		1
61	1	12	DC	H1'	H	5.768	0.0	1
62	1	12	DC	H2'	H	1.947	0.01	1
63	1	12	DC	H2''	H	2.155	0.003	1
64	1	12	DC	H5	H	5.630		1
65	1	12	DC	H6	H	7.417	0.001	1
66	1	12	DC	C6	C	143.649		1
67	1	13	DA	H1'	H	5.837	0.001	1
68	1	13	DA	H2	H	7.583	0.002	1
69	1	13	DA	H2'	H	2.047	0.008	2
70	1	13	DA	H2''	H	2.416	0.005	2
71	1	13	DA	H3'	H	4.799		1
72	1	13	DA	H8	H	7.889	0.001	1
73	1	13	DA	C2	C	154.070		1
74	1	13	DA	C8	C	141.445		1
75	1	14	GF2	H1'	H	6.028	0.001	1
76	1	14	GF2	H2'	H	5.414	0.001	1
77	1	14	GF2	H3'	H	6.082		1
78	1	14	GF2	H8	H	7.188	0.003	1
79	1	14	GF2	C8	C	140.447		1
80	1	14	GF2	HN1	H	10.913	0.002	1
81	1	15	LCG	H1	H	11.299	0.001	1
82	1	15	LCG	H1'	H	5.951	0.0	1
83	1	15	LCG	H2'	H	5.207	0.001	1
84	1	15	LCG	H3'	H	4.873	0.003	1
85	1	15	LCG	H8	H	7.333	0.002	1
86	1	15	LCG	C8	C	136.129		1
87	1	16	DG	H1	H	11.724	0.002	1
88	1	16	DG	H1'	H	6.065	0.004	1
89	1	16	DG	H2'	H	3.212	0.001	1
90	1	16	DG	H2''	H	2.406	0.001	1
91	1	16	DG	H3'	H	4.769	0.003	1
92	1	16	DG	H8	H	7.651	0.002	1
93	1	16	DG	C8	C	138.302		1
94	1	17	DG	H1	H	11.065	0.002	1
95	1	17	DG	H1'	H	6.282	0.0	1
96	1	17	DG	H2'	H	2.507	0.006	1
97	1	17	DG	H2''	H	2.561	0.001	1
98	1	17	DG	H3'	H	4.996		1
99	1	17	DG	H8	H	7.795	0.004	1
100	1	17	DG	C8	C	138.109		1
101	1	18	DA	H1'	H	6.546	0.001	1
102	1	18	DA	H2	H	8.317	0.001	1
103	1	18	DA	H2'	H	3.176	0.001	1
104	1	18	DA	H2''	H	2.881	0.002	1
105	1	18	DA	H3'	H	4.892		1
106	1	18	DA	H8	H	8.554	0.002	1
107	1	18	DA	C8	C	143.313		1
108	1	19	DC	H1'	H	6.358	0.004	1
109	1	19	DC	H2'	H	2.445	0.004	1
110	1	19	DC	H2''	H	2.642	0.001	1
111	1	19	DC	H5	H	6.091		1
112	1	19	DC	H6	H	7.949	0.001	1
113	1	19	DC	C6	C	145.052		1
114	1	20	DG	H1	H	11.941	0.004	1
115	1	20	DG	H1'	H	5.985	0.002	1
116	1	20	DG	H2'	H	2.982	0.004	1
117	1	20	DG	H2''	H	2.982	0.004	1
118	1	20	DG	H3'	H	4.815	0.002	1
119	1	20	DG	H8	H	7.339	0.001	1
120	1	20	DG	C8	C	141.750		1
121	1	21	DG	H1	H	11.555	0.003	1
122	1	21	DG	H1'	H	6.078	0.002	1
123	1	21	DG	H2'	H	2.824	0.005	1
124	1	21	DG	H2''	H	2.870	0.003	1
125	1	21	DG	H3'	H	5.094	0.002	1
126	1	21	DG	H8	H	8.095	0.002	1
127	1	21	DG	C8	C	138.652		1
128	1	22	DG	H1	H	11.387	0.001	1
129	1	22	DG	H1'	H	6.439	0.001	1
130	1	22	DG	H2'	H	2.637	0.002	1
131	1	22	DG	H2''	H	2.537		1
132	1	22	DG	H3'	H	4.740	0.001	1
133	1	22	DG	H8	H	7.789	0.002	1
134	1	22	DG	C8	C	138.088		1

Release date

2020-07-12

Citation

Locked nucleic acid building blocks as versatile tools for advanced G-quadruplex design
Haase, L., Weisz, K.
Nucleic Acids Res. (2020), 48, 10555-10566, PubMed 32890406 , DOI 10.1093/nar/gkaa720 , Abstract

Experiments performed 5 experiments Detail

Chemical shift validation 3 contents Detail