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A quadruplex-duplex hybrid with a three-layered chair G-quadruplex topology
Authors
Vianney, Y.M., Weisz, K.
Assembly
DNA (33-MER)
Entity
1. DNA (33-MER) (polymer, Thiol state: not present), 33 monomers, 10199.29 Da Detail

GGGCGCGAAG CATTCGCGGG GTTAGGGTTX GXG


Formula weight
10199.29 Da
Source organism
synthetic construct
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chemcal Shifts
1H: 219, 13C: 36 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
111DGH1H11.6790.0021
211DGH1'H6.1330.0031
311DGH2'H2.5850.0031
411DGH2''H3.2130.0021
511DGH3'H5.0090.0031
611DGH8H7.4170.0031
711DGC8C141.3481
812DGH1H11.9030.0051
912DGH1'H5.9240.0021
1012DGH2'H2.5200.0031
1112DGH2''H2.8450.0021
1212DGH3'H5.1070.0011
1312DGH8H7.9080.0021
1412DGC8C138.1351
1513DGH1H11.2370.0031
1613DGH1'H5.9040.0021
1713DGH2'H2.7750.0031
1813DGH2''H2.4990.0031
1913DGH3'H5.0120.0011
2013DGH8H7.9530.0021
2113DGC8C138.7591
2214DCH1'H6.1740.0031
2314DCH2'H1.9650.0021
2414DCH2''H2.6060.0041
2514DCH3'H5.0160.0021
2614DCH5H5.6960.0031
2714DCH6H7.5400.0031
2814DCH41H8.1020.0051
2914DCH42H7.4120.0031
3014DCC6C142.9561
3115DGH1H12.6440.0031
3215DGH1'H5.5180.0051
3315DGH2'H2.6100.0021
3415DGH2''H2.5210.0021
3515DGH3'H4.9530.0031
3615DGH8H7.9130.0031
3715DGC8C138.1271
3816DCH1'H5.6770.0031
3916DCH2'H1.8030.0021
4016DCH2''H2.2610.0041
4116DCH3'H4.8060.0021
4216DCH5H5.4480.0011
4316DCH6H7.2820.0031
4416DCH41H8.0990.0031
4516DCH42H6.3490.0021
4616DCC6C142.6991
4717DGH1H12.7730.0021
4817DGH1'H5.2450.0021
4917DGH2'H2.6120.0011
5017DGH2''H2.6530.0031
5117DGH3'H4.9210.01
5217DGH8H7.8490.0011
5317DGC8C138.1871
5418DAH1'H5.8610.0041
5518DAH2H7.5470.0031
5618DAH2'H2.2890.0011
5718DAH2''H2.5900.0041
5818DAH3'H4.9350.01
5918DAH8H7.8910.0011
6018DAC2C154.4540.01
6118DAC8C141.0301
6219DAH1'H5.8520.0041
6319DAH2H7.6670.0021
6419DAH2'H2.0380.0051
6519DAH2''H2.3930.0041
6619DAH3'H4.8580.0011
6719DAH8H7.4370.0021
6819DAC2C154.9650.0031
6919DAC8C139.8351
70110DGH1'H5.3500.0031
71110DGH2'H2.6220.0021
72110DGH2''H2.3210.0021
73110DGH3'H4.8010.0011
74110DGH8H8.0390.0031
75110DGC8C138.9611
76111DCH1'H5.6760.0061
77111DCH2'H1.5770.0031
78111DCH2''H2.0220.0021
79111DCH3'H4.3950.01
80111DCH5H5.1840.0041
81111DCH6H7.1650.0021
82111DCC6C143.4411
83112DAH1'H6.2940.0021
84112DAH2H8.0210.0031
85112DAH2'H2.9960.0041
86112DAH2''H2.9250.0031
87112DAH3'H4.8050.0011
88112DAH8H8.0640.0021
89112DAC2C155.4400.0011
90112DAC8C143.1581
91113DTH1'H5.6490.0031
92113DTH2'H2.1000.0031
93113DTH2''H2.4660.0031
94113DTH3H13.3160.0011
95113DTH3'H4.7470.0011
96113DTH6H7.3940.0021
97113DTH71H1.8170.0011
98113DTH72H1.8170.0011
99113DTH73H1.8170.0011
100113DTC6C139.3901
101114DTH1'H6.0120.0031
102114DTH2'H2.1240.0041
103114DTH2''H2.3950.0021
104114DTH3H13.8800.0031
105114DTH3'H4.8360.0011
106114DTH6H7.3920.0021
107114DTH71H1.6030.0031
108114DTH72H1.6030.0031
109114DTH73H1.6030.0031
110114DTC6C139.8401
111115DCH1'H5.4230.0021
112115DCH2'H2.0030.0071
113115DCH2''H2.2160.0031
114115DCH3'H4.7430.0031
115115DCH5H5.6290.0021
116115DCH6H7.4450.0021
117115DCH41H8.4670.0011
118115DCH42H6.8880.0031
119115DCC6C143.6861
120116DGH1H12.7710.0041
121116DGH1'H5.6620.0011
122116DGH2'H2.1990.0021
123116DGH2''H2.1990.0041
124116DGH3'H4.6950.0011
125116DGH8H7.5780.0041
126116DGC8C138.1741
127117DCH1'H5.3210.0041
128117DCH2'H1.6910.0061
129117DCH2''H2.0150.0021
130117DCH3'H4.5610.0031
131117DCH5H4.4310.0031
132117DCH6H7.0350.0021
133117DCH41H7.8810.0031
134117DCH42H6.6660.0061
135117DCC6C142.7851
136118DGH1H13.6160.0051
137118DGH1'H6.0370.0021
138118DGH2'H2.5500.0041
139118DGH2''H3.1930.0021
140118DGH3'H4.9761
141118DGH8H8.4740.0021
142119DGH1H11.2300.0031
143119DGH1'H5.7890.0041
144119DGH2'H2.9220.0031
145119DGH2''H2.7360.0041
146119DGH3'H4.9191
147119DGH8H7.1810.0031
148119DGC8C141.4381
149120DGH1H10.8260.0031
150120DGH1'H5.6530.0021
151120DGH2'H2.3930.0021
152120DGH2''H2.2820.0031
153120DGH3'H4.9220.0011
154120DGH8H7.1790.0031
155120DGC8C140.6381
156121DGH1H11.1670.0021
157121DGH1'H5.8810.0021
158121DGH2'H2.6340.0051
159121DGH2''H2.4920.0041
160121DGH3'H5.0860.0031
161121DGH8H7.8350.0021
162121DGC8C138.0501
163122DTH1'H6.2530.0021
164122DTH2'H2.2660.0041
165122DTH2''H2.4660.0041
166122DTH3'H4.8390.0011
167122DTH6H7.8210.0021
168122DTH71H1.9480.0061
169122DTH72H1.9480.0061
170122DTH73H1.9480.0061
171122DTC6C140.0241
172123DTH1'H5.7350.0021
173123DTH2'H1.1650.0031
174123DTH2''H1.7710.0031
175123DTH3'H4.5880.01
176123DTH6H7.1750.0021
177123DTH71H1.5470.0031
178123DTH72H1.5470.0031
179123DTH73H1.5470.0031
180123DTC6C138.6201
181124DAH1'H5.7710.0031
182124DAH2H7.5050.0031
183124DAH2'H2.6730.0031
184124DAH2''H2.6810.0041
185124DAH3'H4.9160.0021
186124DAH8H7.8450.0031
187124DAC2C155.3180.0061
188124DAC8C141.1341
189125DGH1H11.0380.0031
190125DGH1'H6.0130.0031
191125DGH2'H3.2980.0051
192125DGH2''H2.8990.0021
193125DGH3'H4.8750.0011
194125DGH8H7.3400.0031
195125DGC8C142.1591
196126DGH1H11.5840.0031
197126DGH1'H5.8130.0031
198126DGH2'H2.5150.0031
199126DGH2''H2.7280.0021
200126DGH3'H5.0420.0021
201126DGH8H7.8610.0031
202126DGC8C138.5791
203127DGH1H11.0000.0031
204127DGH1'H6.1070.0021
205127DGH2'H2.7200.0041
206127DGH2''H2.4910.0031
207127DGH3'H4.9280.0011
208127DGH8H7.8250.0021
209127DGC8C137.7861
210128DTH1'H6.4420.0021
211128DTH2'H2.3420.0021
212128DTH2''H2.5820.0021
213128DTH3'H4.9470.0011
214128DTH6H7.6540.0021
215128DTH71H1.7040.0031
216128DTH72H1.7040.0031
217128DTH73H1.7040.0031
218128DTC6C140.2431
219129DTH1'H6.4390.0021
220129DTH2'H2.2310.0041
221129DTH2''H2.4380.0041
222129DTH3'H4.8021
223129DTH6H7.8060.0041
224129DTH71H2.0090.0011
225129DTH72H2.0090.0011
226129DTH73H2.0090.0011
227129DTC6C139.4201
228130A1H3GH1H14.3091
229130A1H3GH1'H5.4000.0031
230130A1H3GH2H7.1260.0021
231130A1H3GH2'H2.0440.0031
232130A1H3GH2''H2.4320.0031
233130A1H3GH3'H4.7900.0011
234130A1H3GH8H8.0230.0041
235130A1H3GC2C145.8141
236130A1H3GC8C143.5771
237131DGH1H10.9240.0021
238131DGH1'H6.1970.0041
239131DGH2'H3.6880.0071
240131DGH2''H3.1660.0041
241131DGH3'H4.9460.0011
242131DGH8H7.2640.0031
243131DGC8C141.9851
244132BGMH1H11.3650.0011
245132BGMH1'H6.0330.0031
246132BGMH2'H2.4410.0031
247132BGMH2''H2.6860.0011
248132BGMH3'H5.0740.0031
249133DGH1H11.6890.0031
250133DGH1'H6.1750.0021
251133DGH2'H2.6080.0031
252133DGH2''H2.3140.0021
253133DGH3'H4.6920.0011
254133DGH8H8.0560.0021
255133DGC8C139.1631

Release date
2024-03-04
Citation
Structural Differences at Quadruplex-Duplex Interfaces Enable Ligand-Induced Topological Transitions
Vianney, Y.M., Dierks, D., Weisz, K.
Adv. Sci (Weinh). (2024), e2309891-e2309891, PubMed 38477454 , DOI 10.1002/advs.202309891 ,
Entries sharing articles BMRB: 2 entries Detail
  BMRB: 34880 released on 2024-01-10
    Title A quadruplex-duplex hybrid with a three-layered hybrid-2 G-quadruplex topology
  BMRB: 34882 released on 2024-01-10
    Title A quadruplex-duplex hybrid with a three-layered hybrid-2 G-quadruplex topology complexed with Phen-DC3
Experiments performed 10 experiments Detail
Chemical shift validation 3 contents Detail
Keywords (2+2) antiparallel topology, DNA, G-quadruplex, quadruplex-duplex hybrid