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Single acyclic phosphonate nucleotide (R)-ZNA modification on DNA duplex
Authors
Li, X., Groaz, E., Herdewyn, P., Lescrinier, E.
Assembly
C modified (R)-ZNA
Entity
1. C modified (R)-ZNA (polymer, Thiol state: not present), 12 monomers, 3698.354 × 2 Da Detail

CGCGAATTXG CG


Total weight
7396.708 Da
Max. entity weight
3698.354 Da
Source organism
synthetic construct
Exptl. method
solution NMR
Data set
assigned_chemical_shifts, spectral_peak_list
Chemcal Shifts
1H: 242, 13C: 96, 31P: 14 assignments Detail
IDEntity IDSeq IDComp IDAtom IDAtom typeValVal errAmbig. code
111DCH1'H5.7250
211DCH2'H2.4070
311DCH2''H1.9820
411DCH3'H4.6960
511DCH4'H4.0450
611DCH5H5.9020
711DCH5'H3.69402
811DCH5''H3.69402
911DCH6H7.640
1011DCH41H8.20
1111DCH42H7.1850
1211DCC1'C84.9580
1311DCC2'C36.7090
1411DCC3'C75.0910
1511DCC4'C85.2460
1611DCC5C96.620
1711DCC5'C60.6620
1812DGH1H13.0850
1912DGH1'H5.8360
2012DGH2'H2.6440
2112DGH2''H2.6610
2212DGH3'H4.9440
2312DGH4'H4.3140
2412DGH5'H4.060
2512DGH5''H3.950
2612DGH8H7.9580
2712DGC1'C81.3580
2812DGC2'C36.7090
2912DGC3'C76.7310
3012DGC4'C84.3220
3112DGPP-1.3520
3213DCH1'H5.5680
3313DCH2'H2.2130
3413DCH2''H1.8450
3513DCH3'H4.7930
3613DCH4'H4.1340
3713DCH5H5.3720
3813DCH5'H4.1120
3913DCH5''H4.0530
4013DCH6H7.2780
4113DCH41H8.2870
4213DCH42H6.5430
4313DCC1'C83.3830
4413DCC2'C36.2680
4513DCC3'C74.4990
4613DCC4'C82.70
4713DCC5C95.6560
4813DCPP-1.460
4914DGH1H12.80
5014DGH1'H5.1410
5114DGH2'H2.6150
5214DGH2''H2.5730
5314DGH3'H4.9280
5414DGH4'H4.2390
5514DGH5'H4.0350
5614DGH5''H3.9160
5714DGH8H7.8220
5814DGC1'C80.9530
5914DGC2'C37.0950
6014DGC3'C76.220
6114DGC4'C84.2710
6214DGPP-1.3610
6315DAH1'H5.9250
6415DAH2H7.3140
6515DAH2'H2.9080
6615DAH2''H2.7770
6715DAH3'H5.0560
6815DAH4'H4.4310
6915DAH5'H4.1530
7015DAH5''H4.0830
7115DAH8H8.1950
7215DAC1'C81.3130
7315DAC3'C76.4550
7415DAC4'C84.5370
7515DAPP-1.1370
7616DAH1'H6.1450
7716DAH2H7.610
7816DAH2'H2.5810
7916DAH2''H2.8780
8016DAH3'H4.9830
8116DAH4'H4.4730
8216DAH5'H4.2630
8316DAH5''H4.2170
8416DAH8H8.1670
8516DAH61H7.2510
8616DAH62H6.1730
8716DAC1'C81.5830
8816DAC3'C75.6810
8916DAC4'C84.0560
9017DTH1'H5.8580
9117DTH2'H1.9460
9217DTH2''H2.4810
9317DTH3H13.6210
9417DTH3'H4.7770
9517DTH4'H4.1780
9617DTH5'H4.130
9717DTH5''H4.1160
9817DTH6H7.1250
9917DTH71H1.2590
10017DTH72H1.2590
10117DTH73H1.2590
10217DTC1'C81.9960
10317DTC3'C73.8020
10417DTC4'C82.1940
10517DTC7C10.8540
10617DTPP-1.7460
10718DTH1'H5.9860
10818DTH2'H2.1790
10918DTH2''H1.9990
11018DTH3H14.0360
11118DTH3'H4.8440
11218DTH4'H4.1760
11318DTH5'H4.0720
11418DTH5''H3.8760
11518DTH6H7.4260
11618DTH71H1.5260
11718DTH72H1.5260
11818DTH73H1.5260
11918DTC1'C82.1230
12018DTC3'C74.5530
12118DTC4'C83.1060
12218DTC5'C61.9960
12318DTC7C11.150
12419CFVCAAC62.9410
12519CFVCADC94.9560
12619CFVHAAH4.10
12719CFVHAAAH3.9050
12819CFVHACH7.3610
12919CFVHADH5.630
13019CFVHAJH4.0710
13119CFVHALH3.9120
13219CFVHALAH3.8820
13319CFVHAQH3.4120
13419CFVHAQAH2.9440
13519CFVHNAAH8.3150
13619CFVHNAFH6.7870
13719CFVPAMP14.6210
138110DGH1H12.9220
139110DGH1'H5.8630
140110DGH2'H2.7080
141110DGH2''H2.5750
142110DGH3'H4.9570
143110DGH4'H4.3350
144110DGH5'H4.1170
145110DGH5''H4.0550
146110DGH8H7.8310
147110DGC1'C81.5430
148110DGC3'C76.270
149110DGC4'C84.2580
150110DGPP-0.0320
151111DCH1'H5.6670
152111DCH2'H2.3150
153111DCH2''H1.9250
154111DCH3'H4.8030
155111DCH4'H4.1320
156111DCH5H5.4550
157111DCH6H7.3580
158111DCH41H8.5270
159111DCH42H6.7630
160111DCC1'C83.2260
161111DCC2'C36.2050
162111DCC3'C73.5890
163111DCC4'C82.4980
164111DCC5C95.6840
165112DGH1H13.1990
166112DGH1'H6.1460
167112DGH2'H2.3290
168112DGH2''H2.6090
169112DGH3'H4.6610
170112DGH4'H4.1590
171112DGH5'H4.0480
172112DGH8H7.9480
173112DGC1'C81.6460
174112DGC2'C38.6420
175112DGC3'C70.4270
176112DGC4'C84.8920
17711DCH1'H5.7250
17811DCH2'H2.4070
17911DCH2''H1.9820
18011DCH3'H4.6960
18111DCH4'H4.0450
18211DCH5H5.9020
18311DCH5'H3.69402
18411DCH5''H3.69402
18511DCH6H7.640
18611DCH41H8.20
18711DCH42H7.1850
18811DCC1'C84.9580
18911DCC2'C36.7090
19011DCC3'C75.0910
19111DCC4'C85.2460
19211DCC5C96.620
19311DCC5'C60.6620
19412DGH1H13.0850
19512DGH1'H5.8360
19612DGH2'H2.6440
19712DGH2''H2.6610
19812DGH3'H4.9440
19912DGH4'H4.3140
20012DGH5'H4.060
20112DGH5''H3.950
20212DGH8H7.9580
20312DGC1'C81.3580
20412DGC2'C36.7090
20512DGC3'C76.7310
20612DGC4'C84.3220
20712DGPP-1.3520
20813DCH1'H5.5680
20913DCH2'H2.2130
21013DCH2''H1.8450
21113DCH3'H4.7930
21213DCH4'H4.1340
21313DCH5H5.3720
21413DCH5'H4.1120
21513DCH5''H4.0530
21613DCH6H7.2780
21713DCH41H8.2870
21813DCH42H6.5430
21913DCC1'C83.3830
22013DCC2'C36.2680
22113DCC3'C74.4990
22213DCC4'C82.70
22313DCC5C95.6560
22413DCPP-1.460
22514DGH1H12.80
22614DGH1'H5.1410
22714DGH2'H2.6150
22814DGH2''H2.5730
22914DGH3'H4.9280
23014DGH4'H4.2390
23114DGH5'H4.0350
23214DGH5''H3.9160
23314DGH8H7.8220
23414DGC1'C80.9530
23514DGC2'C37.0950
23614DGC3'C76.220
23714DGC4'C84.2710
23814DGPP-1.3610
23915DAH1'H5.9250
24015DAH2H7.3140
24115DAH2'H2.9080
24215DAH2''H2.7770
24315DAH3'H5.0560
24415DAH4'H4.4310
24515DAH5'H4.1530
24615DAH5''H4.0830
24715DAH8H8.1950
24815DAC1'C81.3130
24915DAC3'C76.4550
25015DAC4'C84.5370
25115DAPP-1.1370
25216DAH1'H6.1450
25316DAH2H7.610
25416DAH2'H2.5810
25516DAH2''H2.8780
25616DAH3'H4.9830
25716DAH4'H4.4730
25816DAH5'H4.2630
25916DAH5''H4.2170
26016DAH8H8.1670
26116DAH61H7.2510
26216DAH62H6.1730
26316DAC1'C81.5830
26416DAC3'C75.6810
26516DAC4'C84.0560
26617DTH1'H5.8580
26717DTH2'H1.9460
26817DTH2''H2.4810
26917DTH3H13.6210
27017DTH3'H4.7770
27117DTH4'H4.1780
27217DTH5'H4.130
27317DTH5''H4.1160
27417DTH6H7.1250
27517DTH71H1.2590
27617DTH72H1.2590
27717DTH73H1.2590
27817DTC1'C81.9960
27917DTC3'C73.8020
28017DTC4'C82.1940
28117DTC7C10.8540
28217DTPP-1.7460
28318DTH1'H5.9860
28418DTH2'H2.1790
28518DTH2''H1.9990
28618DTH3H14.0360
28718DTH3'H4.8440
28818DTH4'H4.1760
28918DTH5'H4.0720
29018DTH5''H3.8760
29118DTH6H7.4260
29218DTH71H1.5260
29318DTH72H1.5260
29418DTH73H1.5260
29518DTC1'C82.1230
29618DTC3'C74.5530
29718DTC4'C83.1060
29818DTC5'C61.9960
29918DTC7C11.150
30019CFVCAAC62.9410
30119CFVCADC94.9560
30219CFVHAAH4.10
30319CFVHAAAH3.9050
30419CFVHACH7.3610
30519CFVHADH5.630
30619CFVHAJH4.0710
30719CFVHALH3.9120
30819CFVHALAH3.8820
30919CFVHAQH3.4120
31019CFVHAQAH2.9440
31119CFVHNAAH8.3150
31219CFVHNAFH6.7870
31319CFVPAMP14.6210
314110DGH1H12.9220
315110DGH1'H5.8630
316110DGH2'H2.7080
317110DGH2''H2.5750
318110DGH3'H4.9570
319110DGH4'H4.3350
320110DGH5'H4.1170
321110DGH5''H4.0550
322110DGH8H7.8310
323110DGC1'C81.5430
324110DGC3'C76.270
325110DGC4'C84.2580
326110DGPP-0.0320
327111DCH1'H5.6670
328111DCH2'H2.3150
329111DCH2''H1.9250
330111DCH3'H4.8030
331111DCH4'H4.1320
332111DCH5H5.4550
333111DCH6H7.3580
334111DCH41H8.5270
335111DCH42H6.7630
336111DCC1'C83.2260
337111DCC2'C36.2050
338111DCC3'C73.5890
339111DCC4'C82.4980
340111DCC5C95.6840
341112DGH1H13.1990
342112DGH1'H6.1460
343112DGH2'H2.3290
344112DGH2''H2.6090
345112DGH3'H4.6610
346112DGH4'H4.1590
347112DGH5'H4.0480
348112DGH8H7.9480
349112DGC1'C81.6460
350112DGC2'C38.6420
351112DGC3'C70.4270
352112DGC4'C84.8920

Release date
2024-05-28
Citation
Impact of Single Acyclic Phosphonate Nucleotide (ZNA) Modifications on DNA Duplex Stability
Li, X., Groaz, E., Herdewijn, P., Lescrinier, E.
Chemistry (2024), 30, e202401254-e202401254, PubMed 38687344 , DOI 10.1002/chem.202401254 ,
Entries sharing articles BMRB: 1 entries Detail
  BMRB: 34914 released on 2024-05-28
    Title Single acyclic phosphonate nucleotide (S)-ZNA modification on DNA hairpin
Experiments performed 9 experiments Detail
Chemical shift validation 3 contents Detail
Keywords (R)-ZNA, DNA, Dickerson Drew Decamers, XNA, acyclic backbone, phosphonate linkage