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Solution structure of the complex between UVSSA acidic region and TFIIH p62 PH domain
Authors
Okuda, M., Nishimura, Y.
Assembly
DP1, General transcription factor IIH subunit 1
Entity
1. DP1, General transcription factor IIH subunit 1, entity 1 (polymer, Thiol state: not present), 48 monomers, 5500.752 Da Detail

GSMRRRTEAL GDAEEDEDDE DFVEVPEKEG YEPHIPDHLR PEYGLEAA


2. DP1, General transcription factor IIH subunit 1, entity 2 (polymer, Thiol state: all free), 110 monomers, 12428.26 Da Detail

GSMATSSEEV LLIVKKVRQK KQDGALYLMA ERIAWAPEGK DRFTISHMYA DIKCQKISPE GKAKIQLQLV LHAGDTTNFH FSNESTAVKE RDAVKDLLQQ LLPKFKRKAN


Total weight
17929.012 Da
Max. entity weight
12428.26 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chem. Shift Complete1
Sequence coverage: 44.3 %, Completeness: 34.6 %, Completeness (bb): 38.8 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All34.6 % (640 of 1852)34.8 % (339 of 974)33.8 % (242 of 716)36.4 % (59 of 162)
Backbone38.8 % (362 of 934)39.0 % (124 of 318)38.7 % (180 of 465)38.4 % (58 of 151)
Sidechain31.3 % (334 of 1067)32.6 % (214 of 656)30.0 % (120 of 400) 0.0 % (0 of 11)
Aromatic22.8 % (26 of 114)26.3 % (15 of 57)19.6 % (11 of 56) 0.0 % (0 of 1)
Methyl22.2 % (35 of 158)22.8 % (18 of 79)21.5 % (17 of 79)

1. entity 1

GSMRRRTEAL GDAEEDEDDE DFVEVPEKEG YEPHIPDHLR PEYGLEAA

2. entity 2

GSMATSSEEV LLIVKKVRQK KQDGALYLMA ERIAWAPEGK DRFTISHMYA DIKCQKISPE GKAKIQLQLV LHAGDTTNFH FSNESTAVKE RDAVKDLLQQ LLPKFKRKAN

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.80, Details 0.40 mM [U-99% 13C; U-99% 15N] UVSSA, 0.48 mM TFIIH p62, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
1TFIIH p62natural abundanceprotein0.48 mM
2UVSSA[U-99% 13C; U-99% 15N]protein0.40 mM
3H2Onatural abundancesolvent90 %
4D2O[U-2H]solvent10 %
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 305 K, pH 6.80, Details 0.40 mM [U-99% 13C; U-99% 15N] UVSSA, 0.48 mM TFIIH p62, 100% D2O


#NameIsotope labelingTypeConcentration
5TFIIH p62natural abundanceprotein0.48 mM
6UVSSA[U-99% 13C; U-99% 15N]protein0.40 mM
7D2O[U-2H]solvent100 %
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.80, Details 0.40 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.48 mM UVSSA, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
8TFIIH p62[U-99% 13C; U-99% 15N]protein0.40 mM
9UVSSAnatural abundanceprotein0.48 mM
10H2Onatural abundancesolvent90 %
11D2O[U-2H]solvent10 %
Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 305 K, pH 6.80, Details 0.40 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.48 mM UVSSA, 100% D2O


#NameIsotope labelingTypeConcentration
12TFIIH p62[U-99% 13C; U-99% 15N]protein0.40 mM
13UVSSAnatural abundanceprotein0.48 mM
14D2O[U-2H]solvent100 %

Chem. Shift Complete2
Sequence coverage: 71.5 %, Completeness: 51.6 %, Completeness (bb): 54.2 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All51.6 % (1910 of 3704)51.2 % (997 of 1948)51.5 % (737 of 1432)54.3 % (176 of 324)
Backbone54.2 % (1012 of 1868)54.7 % (348 of 636)53.8 % (500 of 930)54.3 % (164 of 302)
Sidechain49.6 % (1058 of 2134)49.4 % (648 of 1312)49.9 % (399 of 800)50.0 % (11 of 22)
Aromatic36.8 % (84 of 228)39.5 % (45 of 114)33.9 % (38 of 112)50.0 % (1 of 2)
Methyl51.6 % (163 of 316)51.9 % (82 of 158)51.3 % (81 of 158)

1. entity 1

GSMRRRTEAL GDAEEDEDDE DFVEVPEKEG YEPHIPDHLR PEYGLEAA

2. entity 2

GSMATSSEEV LLIVKKVRQK KQDGALYLMA ERIAWAPEGK DRFTISHMYA DIKCQKISPE GKAKIQLQLV LHAGDTTNFH FSNESTAVKE RDAVKDLLQQ LLPKFKRKAN

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.80, Details 0.40 mM [U-99% 13C; U-99% 15N] UVSSA, 0.48 mM TFIIH p62, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
1TFIIH p62natural abundanceprotein0.48 mM
2UVSSA[U-99% 13C; U-99% 15N]protein0.40 mM
3H2Onatural abundancesolvent90 %
4D2O[U-2H]solvent10 %
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 305 K, pH 6.80, Details 0.40 mM [U-99% 13C; U-99% 15N] UVSSA, 0.48 mM TFIIH p62, 100% D2O


#NameIsotope labelingTypeConcentration
5TFIIH p62natural abundanceprotein0.48 mM
6UVSSA[U-99% 13C; U-99% 15N]protein0.40 mM
7D2O[U-2H]solvent100 %
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 305 K, pH 6.80, Details 0.40 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.48 mM UVSSA, 90% H2O/10% D2O


#NameIsotope labelingTypeConcentration
8TFIIH p62[U-99% 13C; U-99% 15N]protein0.40 mM
9UVSSAnatural abundanceprotein0.48 mM
10H2Onatural abundancesolvent90 %
11D2O[U-2H]solvent10 %
Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 305 K, pH 6.80, Details 0.40 mM [U-99% 13C; U-99% 15N] TFIIH p62, 0.48 mM UVSSA, 100% D2O


#NameIsotope labelingTypeConcentration
12TFIIH p62[U-99% 13C; U-99% 15N]protein0.40 mM
13UVSSAnatural abundanceprotein0.48 mM
14D2O[U-2H]solvent100 %

LACS Plot; CA
Referencing offset: -0.08 ppm, Outliers: 3 Detail
LACS Plot; CB
Referencing offset: -0.08 ppm, Outliers: 3 Detail
LACS Plot; HA
Referencing offset: -0.09 ppm, Outliers: 3 Detail
LACS Plot; CO
Referencing offset: 0.19 ppm, Outliers: 3 Detail
Release date
2017-12-26
Citation
Common TFIIH recruitment mechanism in global genome and transcription-coupled repair subpathways
Okuda, M., Nakazawa, Y., Guo, C., Ogi, T., Nishimura, Y.
Nucleic Acids Res. (2017), 45, 13043-13055, PubMed 29069470 , DOI 10.1093/nar/gkx970 ,
Related entities 1. DP1, General transcription factor IIH subunit 1, entity 1, : 1 : 2 : 5 entities Detail
Related entities 2. DP1, General transcription factor IIH subunit 1, entity 2, : 5 : 6 entities Detail
Interaction partners 1. DP1, General transcription factor IIH subunit 1, entity 1, : 3 interactors Detail
Interaction partners 2. DP1, General transcription factor IIH subunit 1, entity 2, : 15 interactors Detail
Experiments performed 23 experiments Detail
nullKeywords DNA repair factor, NUCLEAR PROTEIN, general transcription factor, nucleotide excision repair, transcription-coupled repair