BMRBj - BMREntryMaster

	Total	¹H	¹³C	¹⁵N
All	70.6 % (782 of 1108)	75.1 % (431 of 574)	62.4 % (272 of 436)	80.6 % (79 of 98)
Backbone	74.2 % (411 of 554)	83.5 % (157 of 188)	64.0 % (176 of 275)	85.7 % (78 of 91)
Sidechain	70.1 % (451 of 643)	71.0 % (274 of 386)	70.4 % (176 of 250)	14.3 % (1 of 7)
Aromatic	3.7 % (4 of 108)	3.7 % (2 of 54)	3.8 % (2 of 53)	0.0 % (0 of 1)
Methyl	98.0 % (100 of 102)	96.1 % (49 of 51)	100.0 % (51 of 51)

1. BolA-like protein 2

MPVTEQGLRE RIESAIPQVY HIIVTDLSYG CGQSFDIVVV SDFFQGKSKL MRSRAVNKAV KEELQEIHAF SCKCYTEEEW SKIVVLEHHH HHH

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 100% D2O

#	Name	Isotope labeling	Type	Concentration
5	Fra2	[U-13C; U-15N]	protein	0.8 mM
6	NaCl	natural abundance	salt	150 mM
7	D2O	[U-2H]	solvent	100 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 0.41 ppm, Outliers: 3 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 0.41 ppm, Outliers: 3 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	internal	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	internal	indirect	0.1013291

Referencing offset: 0.08 ppm, Outliers: 1 Detail

Protein Blocks Logo

Calculated from 20 models in PDB: 5Y4B, Strand ID: A Detail

Release date

2017-09-24

Citation

Structural and Biochemical Insights into the Multiple Functions of Yeast Grx3
Chi, C.B., Tang, Y.J., Zhang, J.H., Dai, Y.N., Abdalla, M., Chen, Y.X., Zhou, C.Z.
J. Mol. Biol. (2018), 430, 1235-1248, PubMed 29524511 , DOI 10.1016/j.jmb.2018.02.024 , Abstract

Related entities 1. BolA-like protein 2, : 1 : 2 : 33 entities Detail

Interaction partners 1. BolA-like protein 2, : 10 interactors Detail

More details for 10 interactors identified by 4 citations

Experiments performed 12 experiments Detail

1 2D 15N-1H HSQC

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

2 3D HNCO

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

3 3D HN(CA)CO

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

4 3D CBCA(CO)NH

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

5 3D CBCANH

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

6 3D (H)C(CO)NH-TOCSY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

7 3D HBHA(CBCA)-(CO)NH

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

8 3D H(C)(CO)NH-TOCSY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

9 3D HCCH-COSY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 100% D2O

#	Name	Isotope labeling	Type	Concentration
5	Fra2	[U-13C; U-15N]	protein	0.8 mM
6	NaCl	natural abundance	salt	150 mM
7	D2O	[U-2H]	solvent	100 %

10 3D HCCH-TOCSY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 100% D2O

#	Name	Isotope labeling	Type	Concentration
5	Fra2	[U-13C; U-15N]	protein	0.8 mM
6	NaCl	natural abundance	salt	150 mM
7	D2O	[U-2H]	solvent	100 %

11 3D 1H-15N NOESY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 90% H2O/10% D2O

#	Name	Isotope labeling	Type	Concentration
1	Fra2	[U-13C; U-15N]	protein	0.8 mM
2	NaCl	natural abundance	salt	150 mM
3	H2O	natural abundance	solvent	90 %
4	D2O	[U-2H]	solvent	10 %

12 3D 1H-13C NOESY

Instrument

Bruker DMX - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 303 K, pH 8.0, Details 0.8 mM 15N,13C_labelled Fra2, 100% D2O

#	Name	Isotope labeling	Type	Concentration
5	Fra2	[U-13C; U-15N]	protein	0.8 mM
6	NaCl	natural abundance	salt	150 mM
7	D2O	[U-2H]	solvent	100 %

NMR combined restraints 5 contents Detail

Properties

Input source #1: NMR data (NEF) - Assigned chemical shifts, Distance restraints	combined_36111_5y4b.nef
Input source #2: Coordindates	5y4b.cif
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Sequence alignments

Entity_assembly_ID (NMR): A vs Auth_asym_ID (model): A

---40--------50--------60--------70--------80--------90-------100-------110-------120--------
MPVTEQGLRERIESAIPQVYHIIVTDLSYGCGQSFDIVVVSDFFQGKSKLMRSRAVNKAVKEELQEIHAFSCKCYTEEEWSKIVVLEHHHHHH
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
MPVTEQGLRERIESAIPQVYHIIVTDLSYGCGQSFDIVVVSDFFQGKSKLMRSRAVNKAVKEELQEIHAFSCKCYTEEEWSKIVVLEHHHHHH
--------10--------20--------30--------40--------50--------60--------70--------80--------90---

Chain assignments

Entity_assembly_ID (NMR)	Auth_asym_ID (model)	Length	Unmapped	Conflict	Sequence coverage (%)
A	A	93	0	0	100.0

Content subtype: combined_36111_5y4b.nef

#	Content subtype	Saveframe	Status	# of rows (sets)	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	767		90.3 (chain: A, length: 93)
1	Distance restraints	CNS/XPLOR_distance_constraints_2	OK	652 (1)	noe	84.9 (chain: A, length: 93)
2	Distance restraints	CNS/XPLOR_distance_constraints_4	OK	1011 (1)	noe	90.3 (chain: A, length: 93)
3	Distance restraints	CNS/XPLOR_distance_constraints_3	Warning	30 (1)	hbond	23.7 (chain: A, length: 93)

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 93, Sequence coverage: 90.3%
- Total number of assignments
  - ¹H chemical shifts: 437
  - ¹³C chemical shifts: 254
  - ¹⁵N chemical shifts: 76
- Completeness of assignments
  - Entity_assemble_ID: A
- Redox state of CYS
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: A

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	574	437	76.1
¹³C chemical shifts	436	254	58.3
¹⁵N chemical shifts	102	76	74.5

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	188	160	85.1
¹³C chemical shifts	186	81	43.5
¹⁵N chemical shifts	91	76	83.5

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	386	277	71.8
¹³C chemical shifts	250	173	69.2
¹⁵N chemical shifts	11	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	53	51	96.2
¹³C chemical shifts	53	51	96.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	54	0	0.0
¹³C chemical shifts	53	0	0.0
¹⁵N chemical shifts	1	0	0.0

Distance restraints

Saveframe: CNS/XPLOR_distance_constraints_2
- Status: OK
- Experiment type: noe
- Sequence coverage of experimental data
  - Entity_assembly_ID: A, Chain length: 93, Sequence coverage: 84.9%
- Total number of restraints: 651
- Weight of restraints: 1.0 (651)
- Potential type of restraints: square-well-parabolic (651)
- Range of distance target values: 3.4, 3.9 (Å)
- Histogram of distance target values
- Histogram of discrepancy in distance target values
- Distance restraints per residue
  - Chain_ID: A
- Distance restraints on contact map
- Saveframe: CNS/XPLOR_distance_constraints_4
  - Status: OK
  - Experiment type: noe
  - Sequence coverage of experimental data
    - Entity_assembly_ID: A, Chain length: 93, Sequence coverage: 90.3%
  - Total number of restraints: 1010
  - Weight of restraints: 1.0 (1010)
  - Potential type of restraints: square-well-parabolic (1010)
  - Range of distance target values: 2.9, 5.9 (Å)
  - Histogram of distance target values
  - Histogram of discrepancy in distance target values
  - Distance restraints per residue
    - Chain_ID: A
  - Distance restraints on contact map
  - Saveframe: CNS/XPLOR_distance_constraints_3
    - Status: Warning
    - Experiment type: hbond
    - Sequence coverage of experimental data
      - Entity_assembly_ID: A, Chain length: 93, Sequence coverage: 23.7%
    - Total number of restraints: 30
    - Weight of restraints: 1.0 (30)
    - Potential type of restraints: square-well-parabolic (30)
    - Range of distance target values: 2.15, 3.4 (Å)
    - Histogram of distance target values
    - Distance restraints per residue
      - Chain_ID: A
    - Distance restraints on contact map

Keywords ELECTRON TRANSPORT, Fe metabolism, Fe-S cluster, electron flow, oxidative stress

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Found 1 Document (0.773 seconds)

BMRB: 36111

Sample #1

Sample #2

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. BolA-like protein 2, : 1 : 2 : 33 entities Detail

Interaction partners 1. BolA-like protein 2, : 10 interactors Detail

Experiments performed 12 experiments Detail

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NMR combined restraints 5 contents Detail