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Found 1 Document (1.145 seconds)

BMRB: 4158

1DE3

1H and 15N Nuclear Magnetic Resonance Chemical Shifts of the Cytotoxic Ribonuclease Alpha-sarcin

Authors

Rico, M., Bruix, M., Santoro, J., Campos-Olivas, R., Perez-Canadillas, J.M.

Assembly

Ribonuclease alpha-sarcin

Entity

1. Ribonuclease alpha-sarcin (polymer, Thiol state: not reported), 150 monomers, 16980.73 Da Detail

AVTWTCLNDQ KNPKTNKYET KRLLYNQNKA ESNSHHAPLS DGKTGSSYPH WFTNGYDGDG KLPKGRTPIK FGKSDCDRPP KHSKDGNGKT DHYLLEFPTF PDGHDYKFDS KKPKENPGPA RVIYTYPNKV FCGIIAHTKE NQGELKLCSH

Formula weight

16980.73 Da

Source organism

Aspergillus giganteus

Exptl. method

NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 88.9 %, Completeness (bb): 99.3 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹⁵N
All	88.9 % (971 of 1092)	87.2 % (819 of 939)	99.3 % (152 of 153)
Backbone	99.3 % (434 of 437)	99.3 % (298 of 300)	99.3 % (136 of 137)
Sidechain	82.0 % (537 of 655)	81.5 % (521 of 639)	100.0 % (16 of 16)
Aromatic	95.7 % (88 of 92)	95.6 % (86 of 90)	100.0 % (2 of 2)
Methyl	97.9 % (47 of 48)	97.9 % (47 of 48)

1. Ribonuclease alpha-sarcin

AVTWTCLNDQ KNPKTNKYET KRLLYNQNKA ESNSHHAPLS DGKTGSSYPH WFTNGYDGDG KLPKGRTPIK FGKSDCDRPP KHSKDGNGKT DHYLLEFPTF PDGHDYKFDS KKPKENPGPA RVIYTYPNKV FCGIIAHTKE NQGELKLCSH

Show sample condition

Sample

Temperature 306 (±0.1) K, pH 4.0 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	Ribonuclease alpha-sarcin	[U-15N]		1.5 mM

Release date

2000-03-07

Citation 1

1H and 15N nuclear magnetic resonance assignment and secondary structure of the cytotoxic ribonuclease alpha-Sarcin
Campos-Olivas, R., Bruix, M., Santoro, J., Martinez del Pozo, A., Lacadena, J., Gavilanes, J., Rico, M.
Protein Sci. (1996), 5, 969-972, PubMed 8732769 , DOI 10.1002/pro.5560050519 , Abstract

Show more 2 citaions

Citation 2

1H, 13C and 15N chemical shift referencing in biomolecular NMR
Wishart, D.S., Bigam, C.G., Yao, J., Abildgaard, F., Dyson, H.J., Oldfield, E., Markley, J.L., Sykes, B.D.
J. Biomol. NMR (1995), 6, 135-140, PubMed 8589602 , DOI: , Abstract

Citation 3

Campos-Olivas, R., "Estructura y Dinamica de Proteinas por Resonancia Magnetica Nuclear: Proteina Antifungica y Alpha Sarcina," Thesis, 85-142, Universidad Complutense de Madrid (1997)

Hide non-primary 2 citaions

Related entities 1. Ribonuclease alpha-sarcin, : 1 : 1 : 7 entities Detail

Experiments performed 1 experiments Detail

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr4158_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr4158_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_one	Warning	1062		100.0 (chain: 1, length: 150)
1	Chemical shift references	chemical_shift_reference_one	OK	2		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_one
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 150, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 908
  - ¹⁵N chemical shifts: 154
- Completeness of assignments
  - Entity_assemble_ID: 1
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Comp_index_ID	Comp_ID	Atom_ID	CS value (ppm)
25	TYR	HH	9.08
99	THR	HG1	5.27
124	TYR	HH	9.03
125	THR	HG1	5.72

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	939	810	86.3
¹⁵N chemical shifts	157	154	98.1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	300	297	99.0
¹⁵N chemical shifts	137	134	97.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	639	513	80.3
¹⁵N chemical shifts	20	20	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	48	47	97.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	90	86	95.6
¹⁵N chemical shifts	2	2	100.0

Keywords alpha Sarcin, nuclear magnetic resonance, protein structure, ribonuclease, ribosome-inactivating protein

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Found 1 Document (1.145 seconds)

BMRB: 4158

Sample

Related entities 1. Ribonuclease alpha-sarcin, : 1 : 1 : 7 entities Detail

Experiments performed 1 experiments Detail

Instrument

Sample

Chemical shift validation 3 contents Detail