BMRBj - BMREntryMaster

	Total	¹H	¹³C	¹⁵N
All	73.2 % (1149 of 1570)	66.3 % (546 of 824)	80.0 % (480 of 600)	84.2 % (123 of 146)
Backbone	96.9 % (754 of 778)	97.7 % (255 of 261)	95.5 % (378 of 396)	100.0 % (121 of 121)
Sidechain	56.6 % (521 of 920)	51.7 % (291 of 563)	68.7 % (228 of 332)	8.0 % (2 of 25)
Aromatic	0.0 % (0 of 110)	0.0 % (0 of 55)	0.0 % (0 of 52)	0.0 % (0 of 3)
Methyl	69.3 % (97 of 140)	67.1 % (47 of 70)	71.4 % (50 of 70)

1. HTLV-I CAPSID PROTEIN

PVMHPHGAPP NHRPWQMKDL QAIKQEVSQA APGSPQFMQT IRLAVQQFDP TAKDLQDLLQ YLCSSLVASL HHQQLDSLIS EAETRGITSY NPLAGPLRVQ ANNPQQQGLR REYQQLWLAA FAALPGSAKD PSWA

Show sample condition

Sample

Pressure 1 atm, Temperature 300 K, pH 6.0

#	Name	Isotope labeling	Concentration
1	HTLV-I CAPSID PROTEIN	[U-15N; U-13C]	0.6 mM
2	H2O		95 %
3	D2O		5 %

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type
¹H	na	na	null	null
¹⁵N	na	na	null	null
¹³C	na	na	null	null

Referencing offset: -0.18 ppm, Outliers: 4 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type
¹H	na	na	null	null
¹⁵N	na	na	null	null
¹³C	na	na	null	null

Referencing offset: -0.18 ppm, Outliers: 4 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type
¹H	na	na	null	null
¹⁵N	na	na	null	null
¹³C	na	na	null	null

Referencing offset: 0.09 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type
¹H	na	na	null	null
¹⁵N	na	na	null	null
¹³C	na	na	null	null

Referencing offset: -1.08 ppm, Outliers: 2 Detail

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Calculated from 20 models in PDB: 1G03, Strand ID: A Detail

Release date

2001-05-08

Citation

Structural analysis of the N-terminal domain of the human T-cell leukemia virus capsid protein
Cornilescu, C., Bouamr, F., Yao, X., Carter, C., Tjandra, N.
J. Mol. Biol. (2001), 306, 783-797, PubMed 11243788 , DOI 10.1006/jmbi.2000.4395 , Abstract

Related entities 1. HTLV-I CAPSID PROTEIN, : 1 : 1 : 22 : 25 entities Detail

Interaction partners 1. HTLV-I CAPSID PROTEIN, : 6 interactors Detail

More details for 6 interactors identified by 1 citations

Experiments performed 3 experiments Detail

#	Name	Isotope labeling	Type	Concentration
4	HTLV-I CAPSID PROTEIN	[U-15N; U-13C]		0.6 mM
5	D2O			99.9 %

#	Name	Isotope labeling	Concentration
6	HTLV-I CAPSID PROTEIN	[U-15N]	0.6 mM
7	H2O		95 %
8	D2O		5 %

#	Name	Isotope labeling	Concentration
9	HTLV-I CAPSID PROTEIN	[U-15N; U-4% 13C DMPC/DHPC 3:1]	0.6 mM
10	H2O		95 %
11	D2O		5 %

#	Name	Isotope labeling	Type	Concentration
4	HTLV-I CAPSID PROTEIN	[U-15N; U-13C]		0.6 mM
5	D2O			99.9 %

#	Name	Isotope labeling	Concentration
6	HTLV-I CAPSID PROTEIN	[U-15N]	0.6 mM
7	H2O		95 %
8	D2O		5 %

#	Name	Isotope labeling	Concentration
9	HTLV-I CAPSID PROTEIN	[U-15N; U-4% 13C DMPC/DHPC 3:1]	0.6 mM
10	H2O		95 %
11	D2O		5 %

#	Name	Isotope labeling	Type	Concentration
4	HTLV-I CAPSID PROTEIN	[U-15N; U-13C]		0.6 mM
5	D2O			99.9 %

#	Name	Isotope labeling	Concentration
6	HTLV-I CAPSID PROTEIN	[U-15N]	0.6 mM
7	H2O		95 %
8	D2O		5 %

#	Name	Isotope labeling	Concentration
9	HTLV-I CAPSID PROTEIN	[U-15N; U-4% 13C DMPC/DHPC 3:1]	0.6 mM
10	H2O		95 %
11	D2O		5 %

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr4649_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr4649_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	chemical_shift_set_1	Warning	1219		100.0 (chain: 1, length: 134)

Assigned chemical shifts

Saveframe: chemical_shift_set_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 134, Sequence coverage: 100.0%
- Total number of assignments
  - ¹³C chemical shifts: 477
  - ¹H chemical shifts: 621
  - ¹⁵N chemical shifts: 121
- Completeness of assignments
  - Entity_assemble_ID: 1
- Redox state of CYS
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	600	477	79.5
¹H chemical shifts	824	529	64.2
¹⁵N chemical shifts	152	121	79.6

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	268	249	92.9
¹H chemical shifts	261	254	97.3
¹⁵N chemical shifts	121	121	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	332	228	68.7
¹H chemical shifts	563	275	48.8
¹⁵N chemical shifts	31	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	73	51	69.9
¹H chemical shifts	73	46	63.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	52	0	0.0
¹H chemical shifts	55	0	0.0
¹⁵N chemical shifts	3	0	0.0

Keywords Beta Hairpin loop, helix core

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BMRB: 4649

Sample

Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. HTLV-I CAPSID PROTEIN, : 1 : 1 : 22 : 25 entities Detail

Interaction partners 1. HTLV-I CAPSID PROTEIN, : 6 interactors Detail

Experiments performed 3 experiments Detail

Instrument

Sample #1

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Sample #3

Sample #4

Instrument

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Sample #2

Sample #3

Sample #4

Instrument

Sample #1

Sample #2

Sample #3

Sample #4

Chemical shift validation 3 contents Detail