BMRB: 4677

Solution Structure of the Cysteine-rich Domain of the Escherichia coli Chaperone Protein DnaJ

Authors

Martinez-Yamout, M., Legge, G.B., Zhang, O., Wright, P.E., Dyson, J.

Assembly

cysteine-rich domain of DnaJ Chaperone

Entity

1. cysteine-rich domain of DnaJ (polymer, Thiol state: all disulfide bound), 79 monomers, 8516.587 Da Detail

GVTKEIRIPT LEECDVCHGS GAKPGTQPQT CPTCHGSGQV QMRQGFFAVQ QTCPHCQGRG TLIKDPCNKC HGHGRVERS

2. ZN (non-polymer), 65.409 × 2 Da

Total weight

8647.405 Da

Max. entity weight

8516.587 Da

Entity Connection

na 8 Detail

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ID	Type	Value order	Atom ID 1	Atom ID 2
1	na	sing	2:ZN1:ZN	1:CYS14:SG
2	na	sing	2:ZN1:ZN	1:CYS17:SG
3	na	sing	2:ZN1:ZN	1:CYS67:SG
4	na	sing	2:ZN1:ZN	1:CYS70:SG
5	na	sing	2:ZN1:ZN	1:CYS31:SG
6	na	sing	2:ZN1:ZN	1:CYS34:SG
7	na	sing	2:ZN1:ZN	1:CYS53:SG
8	na	sing	2:ZN1:ZN	1:CYS56:SG

Source organism

Escherichia coli

Exptl. method

NMR

Refine. method

torsion angle dynamics followed by simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 92.6 %, Completeness (bb): 96.5 % Detail

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Polymer type: polypeptide(L)

	Total	1H	13C	15N
All	92.6 % (799 of 863)	92.1 % (419 of 455)	92.0 % (300 of 326)	97.6 % (80 of 82)
Backbone	96.5 % (446 of 462)	98.8 % (161 of 163)	94.7 % (214 of 226)	97.3 % (71 of 73)
Sidechain	89.8 % (421 of 469)	88.4 % (258 of 292)	91.7 % (154 of 168)	100.0 % (9 of 9)
Aromatic	27.5 % (11 of 40)	25.0 % (5 of 20)	30.0 % (6 of 20)
Methyl	100.0 % (58 of 58)	100.0 % (29 of 29)	100.0 % (29 of 29)

1. cysteine-rich domain of DnaJ

GVTKEIRIPT LEECDVCHGS GAKPGTQPQT CPTCHGSGQV QMRQGFFAVQ QTCPHCQGRG TLIKDPCNKC HGHGRVERS

Show sample condition

Sample

Temperature 293 (±1) K, pH 7.0 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	cysteine-rich domain of DnaJ	[U-95% 13C; U-90% 15N]		0.6 mM

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LACS Plot; CA

Referencing offset: -0.53 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	H2O	protons	4.84 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CB

Referencing offset: -0.53 ppm, Outliers: 1 Detail

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Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	H2O	protons	4.84 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; HA

Referencing offset: 0.02 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	H2O	protons	4.84 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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LACS Plot; CO

Referencing offset: 0.69 ppm, Outliers: 1 Detail

Show chemical shift referencing parameters

Chemical shift reference

Atom type	Mol. common name	Atom group	Value	Ref. method	Ref. type	Shift ratio
13C	DSS	methyl protons	0.0 ppm	null	indirect	0.2514495
1H	H2O	protons	4.84 ppm	internal	direct	1.0
15N	DSS	methyl protons	0.0 ppm	null	indirect	0.1013291

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Protein Blocks Logo

Calculated from 20 models in PDB: 1EXK, Strand ID: A Detail

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Release date

2000-03-01

Citation 1

Solution structure of the cysteine-rich domain of the Escherichia coli chaperone protein DnaJ
Martinez-Yamout, M., Legge, G.B., Zhang, O., Wright, P.E., Dyson, J.
J. Mol. Biol. (2000), 300, 805-818, PubMed 10891270 , DOI 10.1006/jmbi.2000.3923 , Abstract

Show more 2 citaions

Citation 2

NMRPipe: a multidimensional spectral processing system based on UNIX pipes
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A.
J. Biomol. NMR (1995), 6, 277-293, PubMed 8520220 , Abstract

Citation 3

NMRView: A computer program for the visualization and analysis of NMR data
Johnson, Blevins
J. Chem. Phys. (1994), 29, 1012-1014

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Related entities 1. cysteine-rich domain of DnaJ, : 1 : 9 : 189 entities Detail

Interaction partners 1. cysteine-rich domain of DnaJ, : 96 interactors Detail

Experiments performed 9 experiments Detail