BMRBj - BMREntryMaster

Found 1 Document (1.761 seconds)

BMRB: 4972

1MU4

1H, 13C, and 15N assignment of Crh, a protein involved in carbon catabolite repression in B. subtilis

Authors

Favier, A., Brutscher, B., Blackledge, M., Galinier, A., Deutscher, J., Penin, F., Marion, D.

Assembly

Crh

Entity

1. Crh (polymer, Thiol state: not present), 87 monomers, 9567.873 Da Detail

MVQQKVEVRL KTGLQARPAA LFVQEANRFT SDVFLEKDGK KVNAKSIMGL MSLAVSTGTE VTLIAQGEDE QEALEKLAAY VQEEVLQ

Formula weight

9567.873 Da

Source organism

Bacillus subtilis

Exptl. method

NMR

Refine. method

simulated annealing,

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 97.7 %, Completeness: 92.6 %, Completeness (bb): 96.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	92.6 % (933 of 1008)	93.1 % (487 of 523)	91.3 % (355 of 389)	94.8 % (91 of 96)
Backbone	96.0 % (499 of 520)	95.5 % (170 of 178)	96.1 % (246 of 256)	96.5 % (83 of 86)
Sidechain	90.0 % (513 of 570)	91.9 % (317 of 345)	87.4 % (188 of 215)	80.0 % (8 of 10)
Aromatic	63.2 % (24 of 38)	84.2 % (16 of 19)	42.1 % (8 of 19)
Methyl	94.9 % (112 of 118)	96.6 % (57 of 59)	93.2 % (55 of 59)

1. catabolite repression HPr

MVQQKVEVRL KTGLQARPAA LFVQEANRFT SDVFLEKDGK KVNAKSIMGL MSLAVSTGTE VTLIAQGEDE QEALEKLAAY VQEEVLQ

Show sample condition

Sample #1

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	catabolite repression HPr	[U-95% 13C; U-90% 15N]		0.4 ~ 0.5 mM

Sample #2

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	catabolite repression HPr	[U-90% 15N]		0.4 ~ 0.5 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: 0.35 ppm, Outliers: 2 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: 0.35 ppm, Outliers: 2 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: -0.02 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: 0.59 ppm, Outliers: 2 Detail

Protein Blocks Logo

Calculated from 24 models in PDB: 1K1C, Strand ID: A Detail

Release date

2002-09-22

Citation

Solution structure and dynamics of Crh, the Bacillus subtilis catabolite repression HPr
Favier, A., Brutscher, B., Blackledge, M., Galinier, A., Deutscher, J., Penin, F., Marion, D.
J. Mol. Biol. (2002), 317, 131-144, PubMed 11916384 , DOI 10.1006/jmbi.2002.5397 , Abstract

Entries sharing articles BMRB: 1, Swiss-Prot: 1 entries Detail

  BMRB: 5757 released on 2003-10-15
    Title 13C, 15N solid state NMR chemical shift assignments for the microcrystallin Crh domain swapped dimer
  Swiss-Prot: O06976 released on 2002-08-13
    Title CRH_BACSU Entity HPr-like protein Crh

Related entities 1. Crh, : 1 : 6 : 113 entities Detail

Interaction partners 1. Crh, : 2 interactors Detail

More details for 2 interactors identified by 1 citations

Experiments performed 8 experiments Detail

1 3D 15N-edited NOESY-HSQC

Instrument

#1 Model Varian INOVA (600 MHz)

#2 Model Varian INOVA (800 MHz)

Sample #1

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	catabolite repression HPr	[U-95% 13C; U-90% 15N]		0.4 ~ 0.5 mM

Sample #2

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	catabolite repression HPr	[U-90% 15N]		0.4 ~ 0.5 mM

2 3D 15N-edited TOCSY-HSQC

Instrument

#1 Model Varian INOVA (600 MHz)

#2 Model Varian INOVA (800 MHz)

Sample #1

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	catabolite repression HPr	[U-95% 13C; U-90% 15N]		0.4 ~ 0.5 mM

Sample #2

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	catabolite repression HPr	[U-90% 15N]		0.4 ~ 0.5 mM

3 HNCA

Instrument

#1 Model Varian INOVA (600 MHz)

#2 Model Varian INOVA (800 MHz)

Sample #1

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	catabolite repression HPr	[U-95% 13C; U-90% 15N]		0.4 ~ 0.5 mM

Sample #2

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	catabolite repression HPr	[U-90% 15N]		0.4 ~ 0.5 mM

4 HNCO

Instrument

#1 Model Varian INOVA (600 MHz)

#2 Model Varian INOVA (800 MHz)

Sample #1

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	catabolite repression HPr	[U-95% 13C; U-90% 15N]		0.4 ~ 0.5 mM

Sample #2

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	catabolite repression HPr	[U-90% 15N]		0.4 ~ 0.5 mM

5 CBCA(CO)NH

Instrument

#1 Model Varian INOVA (600 MHz)

#2 Model Varian INOVA (800 MHz)

Sample #1

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	catabolite repression HPr	[U-95% 13C; U-90% 15N]		0.4 ~ 0.5 mM

Sample #2

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	catabolite repression HPr	[U-90% 15N]		0.4 ~ 0.5 mM

6 H(C)C(CO)NH-TOCSY

Instrument

#1 Model Varian INOVA (600 MHz)

#2 Model Varian INOVA (800 MHz)

Sample #1

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	catabolite repression HPr	[U-95% 13C; U-90% 15N]		0.4 ~ 0.5 mM

Sample #2

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	catabolite repression HPr	[U-90% 15N]		0.4 ~ 0.5 mM

7 (H)C(CO)NH-TOCSY

Instrument

#1 Model Varian INOVA (600 MHz)

#2 Model Varian INOVA (800 MHz)

Sample #1

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	catabolite repression HPr	[U-95% 13C; U-90% 15N]		0.4 ~ 0.5 mM

Sample #2

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	catabolite repression HPr	[U-90% 15N]		0.4 ~ 0.5 mM

8 H(C)CH-TOCSY

Instrument

#1 Model Varian INOVA (600 MHz)

#2 Model Varian INOVA (800 MHz)

Sample #1

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
1	catabolite repression HPr	[U-95% 13C; U-90% 15N]		0.4 ~ 0.5 mM

Sample #2

Temperature 298 (±0.1) K, pH 7.5 (±0.1)

#	Name	Isotope labeling	Type	Concentration
2	catabolite repression HPr	[U-90% 15N]		0.4 ~ 0.5 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr4972_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr4972_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	shift_set_1	Warning	1049		97.7 (chain: 1, length: 87)
1	Chemical shift references	chemical_shift_reference	OK	3		No information

Assigned chemical shifts

Saveframe: shift_set_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 87, Sequence coverage: 97.7%
- Total number of assignments
  - ¹H chemical shifts: 604
  - ¹³C chemical shifts: 354
  - ¹⁵N chemical shifts: 91
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	345	313	90.7
¹³C chemical shifts	215	187	87.0
¹⁵N chemical shifts	13	8	61.5

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	62	59	95.2
¹³C chemical shifts	62	56	90.3

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	523	485	92.7
¹³C chemical shifts	389	354	91.0
¹⁵N chemical shifts	99	91	91.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	178	172	96.6
¹³C chemical shifts	174	167	96.0
¹⁵N chemical shifts	86	83	96.5

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Found 1 Document (1.761 seconds)

BMRB: 4972

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Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Entries sharing articles BMRB: 1, Swiss-Prot: 1 entries Detail

Related entities 1. Crh, : 1 : 6 : 113 entities Detail

Interaction partners 1. Crh, : 2 interactors Detail

Experiments performed 8 experiments Detail

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Chemical shift validation 3 contents Detail