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BMRB: 5003

Backbone Sequential Resonance Assignments of Yeast iso-2 Cytochrome c, Reduced and Oxidized forms

Authors

Benavides-Garcia, M.G., Rivera, E.V., Ramos, W., Hinck, A.P., Nall, B.T.

Assembly

reduced yeast iso-2 cytochrome c

Entity Connection

thioester 2, metal coordination 2 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	metal coordination	sing	1:MET89:SD	2:HEC1:FE
2	metal coordination	sing	1:HIS27:na	2:HEC1:FE
3	thioester	sing	1:CYS23:SG	2:HEC1:CAB
4	thioester	sing	1:CYS26:SG	2:HEC1:CAC

Exptl. method

NMR

Data set

assigned_chemical_shifts

Release date

2002-04-04

Citation 1

Backbone sequential resonance assignments of yeast iso-2 cytochrome c, reduced and oxidized forms
Benavides-Garcia, M.G., Rivera, E.V., Ramos, W., Hinck, A.P., Nall, B.T.
J. Biomol. NMR (2002), 22, 93-94, PubMed 11885986 , Abstract

Show more 1 citaion

Citation 2

NMRPipe: a multidimensional spectral processing system based on UNIX pipes
Delaglio, F., Grzesiek, S., Vuister, G.W., Zhu, G., Pfeifer, J., Bax, A.
J. Biomol. NMR (1995), 6, 277-293, PubMed 8520220 , DOI 10.1007/bf00197809 , Abstract

Hide non-primary 1 citaion

Chemical shift validation 4 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr5003_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	True (see coodinates for details)
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Error

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

Ptnr_site_1	Ptnr_site_2	Redox_state_prediction_1	Redox_state_prediction_2	Distance (Å)
1:89:MET:SD	2:1:HEC:FE	unknown	unknown	n/a
1:23:CYS:SG	2:1:HEC:CAB	oxidized, CA 54.5, CB 35.8 ppm	unknown	n/a
1:26:CYS:SG	2:1:HEC:CAC	oxidized, CA 54.0, CB 38.4 ppm	unknown	n/a

Non-standard residues

None

Content subtype: bmr5003_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	csr1	Warning	901		100.0 (chain: 1, length: 112)
1	Chemical shift references	chemical_shift_reference	OK	3		No information

Assigned chemical shifts

Saveframe: csr1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 112, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 368
  - ¹³C chemical shifts: 428
  - ¹⁵N chemical shifts: 105
- Completeness of assignments
  - Entity_assemble_ID: 1
- Redox state of CYS
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	685	356	52.0
¹³C chemical shifts	499	428	85.8
¹⁵N chemical shifts	121	105	86.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	231	210	90.9
¹³C chemical shifts	224	223	99.6
¹⁵N chemical shifts	107	105	98.1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	454	146	32.2
¹³C chemical shifts	275	205	74.5
¹⁵N chemical shifts	14	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	47	6	12.8
¹³C chemical shifts	47	42	89.4

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	52	0	0.0
¹³C chemical shifts	51	0	0.0
¹⁵N chemical shifts	1	0	0.0

Keywords Cytochrome c, NMR assignments, heme protein, yeast iso-2, E. coli expression

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Found 1 Document (0.956 seconds)

BMRB: 5003

Chemical shift validation 4 contents Detail