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1H, 13C and 15N chemical shift assignments for VARP 687-747
Authors
Owen, D.J., Neuhaus, D., Yang, J., Crawley-Snowdon, H.
Assembly
VARP 687-747
Entity
1. VARP 687-747, entity 1 (polymer, Thiol state: all other bound), 61 monomers, 6314.886 Da Detail

GPLGSTEEDL EDAEDTVSAA DPEFCHPLCQ CPKCAPAQKR LAKVPASGLG VNVTSQDGSS W


2. ZINC ION (non-polymer), 65.409 Da
Total weight
6380.2954 Da
Max. entity weight
6314.886 Da
Entity Connection
na 4 Detail

IDTypeValue orderAtom ID 1Atom ID 2
1nasing1:CYS25:SG2:ZN1:ZN
2nasing1:CYS29:SG2:ZN1:ZN
3nasing1:CYS31:SG2:ZN1:ZN
4nasing1:CYS34:SG2:ZN1:ZN

Source organism
Homo sapiens
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 98.4 %, Completeness: 86.5 %, Completeness (bb): 81.1 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All86.5 % (551 of 637)93.9 % (309 of 329)74.5 % (184 of 247)95.1 % (58 of 61)
Backbone81.1 % (287 of 354)96.7 % (117 of 121)65.7 % (117 of 178)96.4 % (53 of 55)
Sidechain94.1 % (319 of 339)92.3 % (192 of 208)97.6 % (122 of 125)83.3 % (5 of 6)
Aromatic92.3 % (24 of 26)100.0 % (13 of 13)83.3 % (10 of 12)100.0 % (1 of 1)
Methyl96.4 % (54 of 56)92.9 % (26 of 28)100.0 % (28 of 28)

1. entity 1

GPLGSTEEDL EDAEDTVSAA DPEFCHPLCQ CPKCAPAQKR LAKVPASGLG VNVTSQDGSS W

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details H2O sample of 15N,13C-labelled VARP 687-747


#NameIsotope labelingTypeConcentration
1VARP 687-747[U-98% 13C; U-98% 15N]0.45 (±0.15) mM
2TRIS[U-2H]20 mM
3sodium chloridenatural abundance200 mM
4DTT[U-2H]1 mM
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0, Details D2O sample of 15N,13C-labelled VARP 687-747


#NameIsotope labelingTypeConcentration
5VARP 687-747[U-98% 13C; U-98% 15N]0.45 (±0.15) mM
6TRIS[U-2H]20 mM
7sodium chloridenatural abundance200 mM
8DTT[U-2H]1 mM

Release date
2019-12-01
Citation
Mechanism and evolution of the Zn-fingernail required for interaction of VARP with VPS29
Crawley-Snowdon, H., Yang, J.C., Zaccai, N.R., Davis, L.J., Wartosch, L., Herman, E.K., Bright, N.A., Swarbrick, J.S., Collins, B.M., Jackson, L.P., Seaman, M., Luzio, J.P., Dacks, J.B., Neuhaus, D., Owen, D.J.
Nat. Commun. (2020), 11, 5031-5031, PubMed 33024112 , DOI 10.1038/s41467-020-18773-2 ,
Entries sharing articles BMRB: 2 entries Detail
  BMRB: 34461 released on 2020-01-06
    Title Solution structure and 1H, 13C and 15N chemical shift assignments for the complex of VPS29 with VARP 687-747
  BMRB: 50107 released on 2019-12-01
    Title 1H, 13C and 15N chemical shift assignments for VPS29
Related entities 1. VARP 687-747, entity 1, : 1 : 4 : 6 entities Detail
Interaction partners 1. VARP 687-747, entity 1, : 13 interactors Detail
Experiments performed 18 experiments Detail
Chemical shift validation 4 contents Detail
Keywords VARP, retromer, NMR complex structure, Zinc finger, endosome