BMRBj - BMREntryMaster

Found 1 Document (1.333 seconds)

BMRB: 5300

Backbone 1H, 13C, and 15N Resonance Assignments for the 20.8 KDa C.elegans gene product ORF C32E8.3. Northeast Structural Genomics Consortium Target WR33.

Authors

Monleon, D., YiWen, C., Aramini, J., Swapna, G., Kim, S., Szyperski, T., Montelione, G.T.

Assembly

ORF C32E8.3

Entity

1. ORF C32E8.3 (polymer, Thiol state: not present), 190 monomers, 20640.82 Da Detail

MGHHHHHHSH MAAAAGFNWD DADVKKRWDA FTKFGAATAT EMTGKNFDKW LKDAGVLDNK AITGTMTGIA FSKVTGPKKK ATFDETKKVL AFVAEDRARQ SKKPIQDELD AITEKLAKLE APSVGGAAKA NAAGVYSRLT DHTKYTGAHK ERFDAEGKGK GKSGRADTTE NTGYVGAYKN KDSYDKTHGK

Formula weight

20640.82 Da

Source organism

Caenorhabditis elegans

Exptl. method

NMR

Refine. method

torsion angle dynamics

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 98.4 %, Completeness: 54.6 %, Completeness (bb): 90.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	54.6 % (1165 of 2132)	41.3 % (455 of 1103)	63.9 % (531 of 831)	90.4 % (179 of 198)
Backbone	90.0 % (1021 of 1134)	86.9 % (344 of 396)	90.6 % (499 of 551)	95.2 % (178 of 187)
Sidechain	26.2 % (306 of 1169)	15.7 % (111 of 707)	43.0 % (194 of 451)	9.1 % (1 of 11)
Aromatic	1.0 % (2 of 196)	2.0 % (2 of 98)	0.0 % (0 of 95)	0.0 % (0 of 3)
Methyl	31.5 % (53 of 168)	21.4 % (18 of 84)	41.7 % (35 of 84)

1. ORF C32E8.3

Show sample condition

Sample

Temperature 298 (±0.5) K, pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: -0.62 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: -0.62 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: 0.03 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291
¹³C	DSS	methyl protons	null	indirect	0.2514495

Referencing offset: -0.22 ppm, Outliers: 4 Detail

Protein Blocks Logo

Calculated from 10 models in PDB: 1PUL, Strand ID: A Detail

Release date

2002-06-26

Citation 1

Backbone 1H, 15N and 13C assignments for the 21 kDa Caenorhabditis elegans homologue of "brain-specific" protein
Monleon, D., YiWen, C., Aramini, J.M., Swapna, G., Macapagal, D., Gunsalus, K.C., Kim, S., Szyperski, T., Montelione, G.T.
J. Biomol. NMR (2004), 28, 91-92, PubMed 14739645 , DOI 10.1023/B:JNMR.0000012832.71049.bf , Abstract

Show more 1 citaion

Citation 2

Automated analysis of protein NMR assignments using methods from artificial intelligence
J. Mol. Biol. (1997), 269, 592-610, PubMed 9217263 , Abstract

Hide non-primary 1 citaion

Related entities 1. ORF C32E8.3, : 2 : 27 entities Detail

Experiments performed 14 experiments Detail

1 1H-15N HSQC

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

2 HNCO

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

3 HNCACB

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

4 CBCA(CO)NH

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

5 (HA)CA(CO)NH

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

6 HA(CA)(CO)NH

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

7 (HA)CANH

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

8 HA(CA)NH

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

9 (H)CC(CO)NH-TOCSY

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

10 13C-edited NOESY

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

11 15N-edited NOESY

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

12 RD-HNCA,HA

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

13 RD-HA,CA(CO)NH

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

14 RDC-JHC COUPLED (HA)CANH

Instrument

#1 Model Varian INOVA (500 MHz)

#2 Model Varian INOVA (600 MHz)

#3 Model Varian INOVA (750 MHz)

Sample #1

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
1	ORF C32E8.3	[U-13C; U-15N]		1.4 mM

Sample #2

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
2	ORF C32E8.3	[U-13C; U-15N]		0.5 mM

Sample #3

pH 6.50 (±0.05)

#	Name	Isotope labeling	Type	Concentration
3	ORF C32E8.3	[U-13C; U-15N]		0.5 mM
4	DMPC:DHCP:CTAB(30:10:1)			4.5 %

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr5300_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr5300_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	shift_set_1	Warning	1002		98.4 (chain: 1, length: 190)
1	Chemical shift references	chemical_shift_reference	OK	3		No information

Assigned chemical shifts

Saveframe: shift_set_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 190, Sequence coverage: 98.4%
- Total number of assignments
  - ¹³C chemical shifts: 496
  - ¹H chemical shifts: 331
  - ¹⁵N chemical shifts: 175
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Keywords structural genomics, Northeast Structural Genomics Consortium, WR33, nematode

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	88	27	30.7
¹H chemical shifts	88	0	0.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	831	496	59.7
¹H chemical shifts	1103	331	30.0
¹⁵N chemical shifts	204	175	85.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	380	334	87.9
¹H chemical shifts	396	331	83.6
¹⁵N chemical shifts	187	175	93.6

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	451	162	35.9
¹H chemical shifts	707	0	0.0
¹⁵N chemical shifts	17	0	0.0

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Found 1 Document (1.333 seconds)

BMRB: 5300

Sample

Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. ORF C32E8.3, : 2 : 27 entities Detail

Experiments performed 14 experiments Detail

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