BMRBj - BMREntryMaster

Found 1 Document (1.445 seconds)

BMRB: 6196

Backbone 1H, 13C, and 15N Chemical Shift Assignments for Arath;CDC25; a dual-specificity tyrosine phosphatase from Arabidopsis thaliana

Authors

Landrieu, I., Wieruszeski, J., Hassan, S., Lippens, G.

Assembly

Arath; CDC25; CYS131SER mutant

Entity

1. Dual-specificity tyrosine phosphatase; CYS131SER mutant (polymer, Thiol state: free and other bound), 146 monomers, 16417.65 Da Detail

MGRSIFSFFT KKKKMAMARS ISYITSTQLL PLHRRPNIAI IDVRDEERNY DGHIAGSLHY ASGSFDDKIS HLVQNVKDKD TLVFHSALSQ VRGPTCARRL VNYLDEKKED TGIKNIMILE RGFNGWEASG KPVCRCAEVP CKGDSA

2. ZN (non-polymer), 65.409 Da

Total weight

16483.059 Da

Max. entity weight

16417.65 Da

Source organism

Arabidopsis thaliana

Exptl. method

NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 91.1 %, Completeness: 62.6 %, Completeness (bb): 85.6 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	62.6 % (1064 of 1700)	58.7 % (522 of 889)	62.7 % (414 of 660)	84.8 % (128 of 151)
Backbone	85.6 % (741 of 866)	85.2 % (253 of 297)	84.8 % (363 of 428)	88.7 % (125 of 141)
Sidechain	44.4 % (431 of 970)	45.4 % (269 of 592)	43.2 % (159 of 368)	30.0 % (3 of 10)
Aromatic	21.0 % (26 of 124)	32.3 % (20 of 62)	9.8 % (6 of 61)	0.0 % (0 of 1)
Methyl	63.5 % (94 of 148)	77.0 % (57 of 74)	50.0 % (37 of 74)

1. Dual-specificity tyrosine phosphatase; CYS131SER mutant

MGRSIFSFFT KKKKMAMARS ISYITSTQLL PLHRRPNIAI IDVRDEERNY DGHIAGSLHY ASGSFDDKIS HLVQNVKDKD TLVFHSALSQ VRGPTCARRL VNYLDEKKED TGIKNIMILE RGFNGWEASG KPVCRCAEVP CKGDSA

Show sample condition

Sample #1

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-90% 15N]		400 uM

Sample #2

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
2	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C; U-90% 15N]		400 uM

Sample #3

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
3	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C]		400 uM

Sample #4

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
4	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[15N]-Lys		250 uM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	d4-TSPA	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.05 ppm, Outliers: 3 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	d4-TSPA	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.05 ppm, Outliers: 3 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	d4-TSPA	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.09 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	d4-TSPA	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: 1.43 ppm, Outliers: 2 Detail

Release date

2004-09-06

Citation

A small CDC25 dual-specificity tyrosine-phosphatase isoform in Arabidopsis thaliana
Landrieu, I., Da Costa, M., De Veylder, L., Dewitte, F., Vandepoele, K., Hassan, S., Wieruszeski, J., Faure, J.D., Von Montagu, M., Inze, D., Lippens, G.
Proc. Natl. Acad. Sci. U. S. A. (2004), 101, 13380-13385, PubMed 15329414 , DOI 10.1073/pnas.0405248101 , Abstract

Entries sharing articles BMRB: 1, Swiss-Prot: 1 entries Detail

  BMRB: 6195 released on 2004-09-06
    Title Backbone 1H, 13C, and 15N Chemical Shift Assignments for Arath;CDC25; a dual-specificity tyrosine phosphatase from Arabidopsis thaliana
  Swiss-Prot: Q8GY31 released on 2005-03-29
    Title CDC25_ARATH Entity Dual specificity phosphatase Cdc25

Related entities 1. Dual-specificity tyrosine phosphatase; CYS131SER mutant, : 2 : 22 entities Detail

Interaction partners 1. Dual-specificity tyrosine phosphatase; CYS131SER mutant, : 1 interactors Detail

More details for 1 interactors identified by 1 citations

Experiments performed 6 experiments Detail

1 1H-15N NOESY

Instrument

#1 Model Bruker DMX (600 MHz)

#2 Model Bruker Avance (800 MHz)

Sample #1

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-90% 15N]		400 uM

Sample #2

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
2	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C; U-90% 15N]		400 uM

Sample #3

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
3	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C]		400 uM

Sample #4

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
4	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[15N]-Lys		250 uM

2 1H-13C NOESY

Instrument

#1 Model Bruker DMX (600 MHz)

#2 Model Bruker Avance (800 MHz)

Sample #1

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-90% 15N]		400 uM

Sample #2

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
2	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C; U-90% 15N]		400 uM

Sample #3

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
3	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C]		400 uM

Sample #4

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
4	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[15N]-Lys		250 uM

3 HNCA

Instrument

#1 Model Bruker DMX (600 MHz)

#2 Model Bruker Avance (800 MHz)

Sample #1

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-90% 15N]		400 uM

Sample #2

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
2	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C; U-90% 15N]		400 uM

Sample #3

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
3	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C]		400 uM

Sample #4

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
4	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[15N]-Lys		250 uM

4 HNCO

Instrument

#1 Model Bruker DMX (600 MHz)

#2 Model Bruker Avance (800 MHz)

Sample #1

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-90% 15N]		400 uM

Sample #2

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
2	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C; U-90% 15N]		400 uM

Sample #3

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
3	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C]		400 uM

Sample #4

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
4	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[15N]-Lys		250 uM

5 HN(CA)CO

Instrument

#1 Model Bruker DMX (600 MHz)

#2 Model Bruker Avance (800 MHz)

Sample #1

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-90% 15N]		400 uM

Sample #2

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
2	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C; U-90% 15N]		400 uM

Sample #3

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
3	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C]		400 uM

Sample #4

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
4	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[15N]-Lys		250 uM

6 CBCANH

Instrument

#1 Model Bruker DMX (600 MHz)

#2 Model Bruker Avance (800 MHz)

Sample #1

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
1	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-90% 15N]		400 uM

Sample #2

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
2	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C; U-90% 15N]		400 uM

Sample #3

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
3	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[U-95% 13C]		400 uM

Sample #4

Temperature 293 (±1) K, pH 7.6 (±0.2)

#	Name	Isotope labeling	Type	Concentration
4	Dual-specificity tyrosine phosphatase; CYS131SER mutant	[15N]-Lys		250 uM

Chemical shift validation 4 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr6196_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr6196_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	Arath;CDC25C72S_shift_set_1	Warning	1095		89.7 (chain: 1, length: 146)
1	Chemical shift references	chemical_shift_reference	OK	3		No information

Assigned chemical shifts

Saveframe: Arath;CDC25C72S_shift_set_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 146, Sequence coverage: 89.7%
- Total number of assignments
  - ¹³C chemical shifts: 388
  - ¹H chemical shifts: 583
  - ¹⁵N chemical shifts: 124
- Completeness of assignments
  - Entity_assemble_ID: 1
- Redox state of CYS
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Comp_index_ID	Comp_ID	Atom_ID	CS value (ppm)
33	HIS	HD1	6.92
59	HIS	HD1	6.72
71	HIS	HD1	7.11

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	660	388	58.8
¹H chemical shifts	889	472	53.1
¹⁵N chemical shifts	162	124	76.5

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	292	253	86.6
¹H chemical shifts	297	249	83.8
¹⁵N chemical shifts	141	123	87.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	368	135	36.7
¹H chemical shifts	592	223	37.7
¹⁵N chemical shifts	21	1	4.8

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	78	28	35.9
¹H chemical shifts	78	54	69.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹³C chemical shifts	61	0	0.0
¹H chemical shifts	62	10	16.1
¹⁵N chemical shifts	1	0	0.0

Keywords CDC25, cell cycle, phosphorylation, plant, zinc binding loop

Search

Query history

Resources

Search for primary databases

Search for subsidiary databases

Display

Hits per page

Statistics

Query Changes will take effect after "OK" button is selected.

Maximum hits

Default conjunction operator

Omni-box

Search filter

Sequence search (BLAST)

E-value

Query sequence coverage

Miscellaneous

The number of previewed publications

Completeness of assigned chemical shift

Sequence chart about top aligned regions

Sequence chart about interacting regions

Hit context with highlight

Link destinations for BMRB, PDB and EMDB

Found 1 Document (1.445 seconds)

BMRB: 6196

Sample #1

Sample #2

Sample #3

Sample #4

Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Entries sharing articles BMRB: 1, Swiss-Prot: 1 entries Detail

Related entities 1. Dual-specificity tyrosine phosphatase; CYS131SER mutant, : 2 : 22 entities Detail

Interaction partners 1. Dual-specificity tyrosine phosphatase; CYS131SER mutant, : 1 interactors Detail

Experiments performed 6 experiments Detail

Instrument

Sample #1

Sample #2

Sample #3

Sample #4

Instrument

Sample #1

Sample #2

Sample #3

Sample #4

Instrument

Sample #1

Sample #2

Sample #3

Sample #4

Instrument

Sample #1

Sample #2

Sample #3

Sample #4

Instrument

Sample #1

Sample #2

Sample #3

Sample #4

Instrument

Sample #1

Sample #2

Sample #3

Sample #4

Chemical shift validation 4 contents Detail