BMRBj - BMREntryMaster

Found 1 Document (1.33 seconds)

BMRB: 6680

1ZXG

Backbone and sidechain 1H, 13C, and 15N Chemical Shift Assignments for A219.

Authors

He, Y., Yeh, C., Alexander, P., Bryan, P., Orban, J.

Assembly

A219 monomer

Entity

1. A219 monomer (polymer, Thiol state: not present), 59 monomers, 6728.442 Da Detail

MYYLVVNKQQ NAFYEVLNMP NLNEDQRNAF IQSLKDDPSQ SANVLAEAQK LNDVQAPKA

Formula weight

6728.442 Da

Source organism

Saccharomyces cerevisiae

Exptl. method

NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 83.7 %, Completeness (bb): 83.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	83.7 % (591 of 706)	90.0 % (334 of 371)	72.0 % (190 of 264)	94.4 % (67 of 71)
Backbone	83.0 % (289 of 348)	97.4 % (112 of 115)	68.9 % (122 of 177)	98.2 % (55 of 56)
Sidechain	86.3 % (360 of 417)	86.7 % (222 of 256)	86.3 % (126 of 146)	80.0 % (12 of 15)
Aromatic	68.2 % (30 of 44)	72.7 % (16 of 22)	63.6 % (14 of 22)
Methyl	100.0 % (62 of 62)	100.0 % (31 of 31)	100.0 % (31 of 31)

1. A219

MYYLVVNKQQ NAFYEVLNMP NLNEDQRNAF IQSLKDDPSQ SANVLAEAQK LNDVQAPKA

Show sample condition

Sample

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Release date

2005-11-02

Citation

Solution NMR structures of IgG binding domains with artificially evolved high levels of sequence identity but different folds
He, Y., Yeh, D., Alexander, P., Bryan, P., Orban, J.
Biochemistry (2005), 44, 14055-14061, PubMed 16245921 , DOI 10.1021/bi051232j , Abstract

Entries sharing articles BMRB: 1 entries Detail

BMRB: 6679 released on 2005-11-02
Title G311

Related entities 1. A219 monomer, : 1 : 179 entities Detail

Experiments performed 10 experiments Detail

1 3D HNCACB

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

2 3D HNCO

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

3 3D CBCACONH

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

4 3D HBHA(CBCACO)NH

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

5 3D(H)C(CO)NH-TOCSY

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

6 3DH(CCO)NH-TOCSY

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

7 2DTOCSY

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

8 2D-CBHD

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

9 2DCBHE

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

10 2D TOCSY

Instrument

Model Bruker DRX (600 MHz)

Sample #1

Temperature 298 K, pH 7 (±0.1)

#	Name	Isotope labeling	Concentration
1	A219	[U-13C; U-15N]	0.2 ~ 0.4 mM
2	ammonium bicarbonate		2 mM
3	postassium phosphate buffer		100 mM
4	D2O		10 %

Sample #2

Temperature 298 K, pH 7 (±0.1)

#	Name	Concentration
5	A219	0.2 ~ 0.4 mM
6	ammonium bicarbonate	2 mM
7	postassium phosphate buffer	100 mM
8	D2O	10 %

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr6680_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr6680_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	chem_shift_list_1	Warning	646		100.0 (chain: 1, length: 59)
1	Chemical shift references	chemical_shift_referencing	OK	3		No information

Assigned chemical shifts

Saveframe: chem_shift_list_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 59, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 397
  - ¹³C chemical shifts: 181
  - ¹⁵N chemical shifts: 68
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	371	331	89.2
¹³C chemical shifts	264	181	68.6
¹⁵N chemical shifts	72	68	94.4

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	115	113	98.3
¹³C chemical shifts	118	57	48.3
¹⁵N chemical shifts	56	55	98.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	256	218	85.2
¹³C chemical shifts	146	124	84.9
¹⁵N chemical shifts	16	13	81.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	33	33	100.0
¹³C chemical shifts	33	33	100.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	22	16	72.7
¹³C chemical shifts	22	14	63.6

Keywords IgG-binding, NMR, phage display, protein G, IgG binding, protein A

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Found 1 Document (1.33 seconds)

BMRB: 6680

Sample

Entries sharing articles BMRB: 1 entries Detail

Related entities 1. A219 monomer, : 1 : 179 entities Detail

Experiments performed 10 experiments Detail

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Chemical shift validation 3 contents Detail