BMRBj - BMREntryMaster

Found 1 Document (1.599 seconds)

BMRB: 7142

2FJ3

rabbit prion protein (91-228)

Authors

Li, J., Mei, F., Xiao, G., Guo, C., Lin, D.

Assembly

prion protein

Entity

1. prion protein (polymer, Thiol state: all disulfide bound), 138 monomers, 15638.27 Da Detail

QGGTHNQWGK PSKPKTSMKH VAGAAAAGAV VGGLGGYMLG SAMSRPLIHF GNDYEDRYYR ENMYRYPNQV YYRPVDQYSN QNSFVHDCVN ITVKQHTVTT TTKGENFTET DIKIMERVVE QMCITQYQQE SQAAYQRA

Formula weight

15638.27 Da

Entity Connection

disulfide 1 Detail

ID	Type	Value order	Atom ID 1	Atom ID 2
1	disulfide	sing	1:CYS88:SG	1:CYS123:SG

Source organism

Oryctolagus cuniculus

Exptl. method

NMR

Refine. method

simulated annealing

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 99.3 %, Completeness: 92.1 %, Completeness (bb): 98.0 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	92.1 % (1465 of 1591)	94.9 % (786 of 828)	87.0 % (530 of 609)	96.8 % (149 of 154)
Backbone	98.0 % (802 of 818)	97.5 % (276 of 283)	98.3 % (395 of 402)	98.5 % (131 of 133)
Sidechain	87.1 % (783 of 899)	93.0 % (507 of 545)	77.5 % (258 of 333)	85.7 % (18 of 21)
Aromatic	41.3 % (62 of 150)	73.3 % (55 of 75)	8.1 % (6 of 74)	100.0 % (1 of 1)
Methyl	97.5 % (115 of 118)	98.3 % (58 of 59)	96.6 % (57 of 59)

1. prion protein

QGGTHNQWGK PSKPKTSMKH VAGAAAAGAV VGGLGGYMLG SAMSRPLIHF GNDYEDRYYR ENMYRYPNQV YYRPVDQYSN QNSFVHDCVN ITVKQHTVTT TTKGENFTET DIKIMERVVE QMCITQYQQE SQAAYQRA

Show sample condition

Sample

Temperature 298 (±0.5) K, pH 4.5

#	Name	Isotope labeling	Type	Concentration
1	prion protein	[U-13C; U-15N]		1 mM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.2 ppm, Outliers: 2 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.2 ppm, Outliers: 2 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: 0.05 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	null	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	null	indirect	0.1013291

Referencing offset: -0.16 ppm, Outliers: 3 Detail

Protein Blocks Logo

Calculated from 15 models in PDB: 2FJ3, Strand ID: A Detail

Release date

2007-06-04

Citation

1H, 13C and 15N resonance assignments of rabbit prion protein (91-228)
Li, J., Mei, F., Xiao, G., Guo, C., Lin, D.
J. Biomol. NMR (2007), 38, 181-181, PubMed 17415669 , DOI 10.1007/s10858-006-9115-9 , Abstract

Related entities 1. prion protein, : 1 : 1 : 2 : 111 entities Detail

Interaction partners 1. prion protein, : 1 interactors Detail

More details for 1 interactors identified by 1 citations

Experiments performed 4 experiments Detail

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr7142_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	True (see coordinates for details)
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

Ptnr_site_1	Ptnr_site_2	Redox_state_prediction_1	Redox_state_prediction_2	Distance (Å)
1:88:CYS:SG	1:123:CYS:SG	oxidized, CA 58.992, CB 41.445 ppm	oxidized, CA 60.243, CB 42.406 ppm	n/a

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr7142_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	chem_shift_list_1	Warning	1616		100.0 (chain: 1, length: 138)
1	Chemical shift references	chemical_shift_referencing	OK	3		No information

Assigned chemical shifts

Saveframe: chem_shift_list_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 138, Sequence coverage: 100.0%
- Total number of assignments
  - ¹H chemical shifts: 928
  - ¹³C chemical shifts: 532
  - ¹⁵N chemical shifts: 156
- Completeness of assignments
  - Entity_assemble_ID: 1
- Redox state of CYS
- Peptide bond of PRO
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Comp_index_ID	Comp_ID	Atom_ID	CS value (ppm)
20	HIS	HD1	7.096
37	TYR	HH	8.591
49	HIS	HD1	12.479
59	TYR	HH	6.936
71	TYR	HH	8.59
86	HIS	HD1	7.352
86	HIS	HE2	8.118

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	828	793	95.8
¹³C chemical shifts	609	532	87.4
¹⁵N chemical shifts	161	156	96.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	283	281	99.3
¹³C chemical shifts	276	272	98.6
¹⁵N chemical shifts	133	132	99.2

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	545	512	93.9
¹³C chemical shifts	333	260	78.1
¹⁵N chemical shifts	28	24	85.7

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	65	64	98.5
¹³C chemical shifts	65	63	96.9

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	75	55	73.3
¹³C chemical shifts	74	4	5.4
¹⁵N chemical shifts	1	1	100.0

Keywords prion protein

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Found 1 Document (1.599 seconds)

BMRB: 7142

Sample

Chemical shift reference

Chemical shift reference

Chemical shift reference

Chemical shift reference

Related entities 1. prion protein, : 1 : 1 : 2 : 111 entities Detail

Interaction partners 1. prion protein, : 1 interactors Detail

Experiments performed 4 experiments Detail

Instrument

Sample

Instrument

Sample

Instrument

Sample

Instrument

Sample

Chemical shift validation 3 contents Detail