Tools that enhance interoperability:

BMRBxTool

BMRBoTool

BMRBoTool

BMRBoTool converts NMR-STAR data into RDF format (BMRB/RDF). Along with the BMRB/RDF, BMRBoTool generates its ontology in the OWL format (BMRB/OWL). The both RDF and OWL constitute a standard model for data exchange on the Web and makes it possible to query across diverse information resources using SPARQL.

BMRBoTool has been designed to work in combination with BMRBxTool, which generates validated BMRB/XML documents.

Please refer to the README file for installation and usage.

SCM site in software development

References

  1. Masashi Yokochi, Naohiro Kobayashi, Eldon L. Ulrich, Akira R. Kinjo, Takeshi Iwata, Yannis E. Ioannidis, Miron Linvy, John L. Markley, Haruki Nakamura, Chojiro Kojima, Toshimichi Fujiwara, J. Biomed. Semantics, 7(1), 16 (2016).
  2. Akira R. Kinjo, Hirofumi Suzuki, Reiko Yamashita, Yasuyo Ikegawa, Takahiro Kudou, Reiko Igarashi, Yumiko Kengaku, Hasumi Cho, Daron M. Standley, Atsushi Nakagawa, Haruki Nakamura, Nucleic Acids Research, 40, D453-D460 (2012).
  3. Eldon L. Ulrich, Hideo Akutsu, Jurgen F. Doreleijers, Yoko Harano, Yannis E. Ioannidis, Jundong Lin, Miron Livny, Steve Mading, Dimitri Maziuk, Zachary Miller, Eiichi Nakatani, Christopher F. Schulte, David E. Tolmie, R. Kent Wenger, Hongyang Yao, John L. Markley, Nucleic Acids Research, 36, D402-D408 (2008).
  4. John Wesbrook, Nobutoshi Ito, Haruki Nakamura, Kim Henrick, Helen M. Berman, Bioinformatics, 21(7), 988-992 (2005).