Tools that enhance interoperability:
BMRBxTool converts NMR-STAR data into XML format (BMRB/XML). Schema of the BMRB/XML (BMRB/XML Schema) has been
translated from the current NMR-STAR Dictionary using mmCIF Dictionary Suite provided by RCSB PDB.
BMRBxTool generates qualified XML documents by programmed remediation, and reports validation
errors against the XML schema. By using scripts bundled with the tool, XML
documents can be updated for both new entries and revised ones.
Please refer to the README file for installation and usage.
SCM site in software development
References
- Masashi Yokochi, Naohiro Kobayashi, Eldon L. Ulrich, Akira R. Kinjo, Takeshi Iwata, Yannis E. Ioannidis, Miron Linvy, John L. Markley, Haruki Nakamura, Chojiro Kojima, Toshimichi Fujiwara, J. Biomed. Semantics, 7(1), 16 (2016).
- Eldon L. Ulrich, Hideo Akutsu, Jurgen F. Doreleijers, Yoko Harano, Yannis E. Ioannidis, Jundong Lin, Miron Livny, Steve Mading, Dimitri Maziuk, Zachary Miller, Eiichi Nakatani, Christopher F. Schulte, David E. Tolmie, R. Kent Wenger, Hongyang Yao, John L. Markley, Nucleic Acids Research, 36, D402-D408 (2008).
- John Wesbrook, Nobutoshi Ito, Haruki Nakamura, Kim Henrick, Helen M. Berman, Bioinformatics, 21(7), 988-992 (2005).
