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HlyII-C minor trans form
Authors
Kaplan, A.R., Maciejewski, M.W., Olson, R., Alexandrescu, A.T.
Assembly
HlyIIC-Trans
Entity
1. HlyIIC-Trans (polymer, Thiol state: not present), 94 monomers, 10415.52 Da Detail

DNQKALEEQM NSINSVNDKL NKGKGKLSLS MNGNQLKATS SNAGYGISYE DKNWGIFVNG EKVYTFNEKS TVGNISNDIN KLNIKGPYIE IKQI


Formula weight
10415.52 Da
Source organism
Bacillus cereus
Exptl. method
solution NMR
Refine. method
molecular dynamics
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 68.1 %, Completeness: 52.6 %, Completeness (bb): 57.3 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All52.6 % (583 of 1109)51.0 % (298 of 584)52.4 % (216 of 412)61.1 % (69 of 113)
Backbone57.3 % (322 of 562)56.6 % (111 of 196)56.8 % (155 of 273)60.2 % (56 of 93)
Sidechain49.1 % (310 of 632)48.5 % (188 of 388)48.7 % (109 of 224)65.0 % (13 of 20)
Aromatic15.6 % (10 of 64)15.6 % (5 of 32)16.1 % (5 of 31) 0.0 % (0 of 1)
Methyl62.5 % (55 of 88)63.6 % (28 of 44)61.4 % (27 of 44)

1. HlyIIC-trans (minor)

DNQKALEEQM NSINSVNDKL NKGKGKLSLS MNGNQLKATS SNAGYGISYE DKNWGIFVNG EKVYTFNEKS TVGNISNDIN KLNIKGPYIE IKQI

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 6.0


#NameIsotope labelingTypeConcentration
1HlyIIC-trans[U-99% 13C; U-99% 15N]1.0 mM
2sodium phosphatenatural abundance20 mM
3EDTAnatural abundance1 mM
4AEBSFnatural abundance1 mM
5sodium azidenatural abundance0.05 % w/v
Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 310 K, pH 6.0


#NameIsotope labelingTypeConcentration
6HlyIIC-trans[U-99% 15N]1.0 mM
7sodium phosphatenatural abundance20 mM
8EDTAnatural abundance1 mM
9AEBSFnatural abundance1 mM
10sodium azidenatural abundance0.05 % w/v
Sample #3

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 310 K, pH 6.0


#NameIsotope labelingTypeConcentration
11HlyIIC-trans[U-99% 15N]1.0 mM
12sodium phosphatenatural abundance20 mM
13EDTAnatural abundance1 mM
14AEBSFnatural abundance1 mM
15sodium azidenatural abundance0.05 % w/v
Sample #4

Solvent system 100% D2O, Pressure 1 atm, Temperature 310 K, pH 6.0


#NameIsotope labelingTypeConcentration
16HlyIIC-trans[U-99% 13C; U-99% 15N]1.0 mM
17sodium phosphatenatural abundance20 mM
18EDTAnatural abundance1 mM
19AEBSFnatural abundance1 mM
20sodium azidenatural abundance0.05 % w/v

LACS Plot; CA
Referencing offset: -0.54 ppm, Outliers: 3 Detail
LACS Plot; CB
Referencing offset: -0.54 ppm, Outliers: 3 Detail
LACS Plot; HA
Referencing offset: -0.14 ppm, Outliers: 1 Detail
LACS Plot; CO
Referencing offset: 0.07 ppm, Outliers: 1 Detail
Protein Blocks Logo
Calculated from 25 models in PDB: 6D53, Strand ID: C Detail


Release date
2013-09-04
Citation
NMR assignments for the cis and trans forms of the hemolysin II C-terminal domain
Kaplan, A.R., Maciejewski, M.W., Olson, R., Alexandrescu, A.T.
Biomol. NMR Assign. (2014), 8, 419-423, PubMed 24234348 , DOI 10.1007/s12104-013-9530-2 ,
Entries sharing articles BMRB: 3 entries Detail
  BMRB: 30737 released on 2020-04-13
    Title Dimeric form of the trans-stabilized Hemolysin II C-terminal domain
  BMRB: 19461 released on 2013-08-27
    Title HlyII-C major cis form
  BMRB: 19463 released on 2013-08-27
    Title p87m-BMRB
Experiments performed 16 experiments Detail
nullKeywords bacterial virulence, conformational heterogeneity, membrane proteins, modular proteins, oligomerization, proline isomerization