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Structural insights into interaction of KYE28 and lipopolysachharide
Authors
Bhunia, A., Malmsten, M., Datta, A.
Assembly
KYE28 and lipopolysachharide
Entity
1. KYE28 and lipopolysachharide (polymer, Thiol state: not present), 28 monomers, 3595.166 Da Detail

KYEITTIHNL FRKLTHRLFR RNFGYTLR


Formula weight
3595.166 Da
Exptl. method
solution NMR
Refine. method
distance geometry
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 96.4 %, Completeness: 86.9 %, Completeness (bb): 96.5 % Detail

Polymer type: polypeptide(L)

Total1H
All86.9 % (173 of 199)86.9 % (173 of 199)
Backbone96.5 % (55 of 57)96.5 % (55 of 57)
Sidechain83.1 % (118 of 142)83.1 % (118 of 142)
Aromatic81.5 % (22 of 27)81.5 % (22 of 27)
Methyl87.5 % (14 of 16)87.5 % (14 of 16)

1. entity

KYEITTIHNL FRKLTHRLFR RNFGYTLR

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 4.5


#NameIsotope labelingTypeConcentration
1entitynatural abundance1 mM
2TSPnatural abundance1 mM
3H2Onatural abundance90 %
4D2Onatural abundance10 %

Protein Blocks Logo
Calculated from 20 models in PDB: 2NAT, Strand ID: A Detail


Release date
2016-05-22
Citation
Role of Aromatic Amino Acids in Lipopolysaccharide and Membrane Interactions of Antimicrobial Peptides for Use in Plant Disease Control
Datta, A., Malmsten, M., Datta, A.
J. Biol. Chem. (2016), 291, 13301-13317, PubMed 27137928 , DOI 10.1074/jbc.M116.719575 ,
Entries sharing articles BMRB: 1 entries Detail
  BMRB: 25947 released on 2016-05-22
    Title Solution structure of KYE28A in lipopolysachharide
Related entities 1. KYE28 and lipopolysachharide, : 1 : 7 : 4 : 2 : 8 entities Detail
Interaction partners 1. KYE28 and lipopolysachharide, : 6 interactors Detail
Experiments performed 2 experiments Detail
NMR combined restraints 4 contents Detail
Keywords antimicrobial peptide derived from Heparin cofactor II