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BMRB: 27853

6F8L

NMR resonance assignments for the GSPII-B domain of the traffic ATPase PilF from Thermus thermophilus in the apo and c-di-GMP-bound states

Authors

Neissner, K., Keller, H., Hacker, C., Durchardt-Ferner, E., Woehnert, J.

Assembly

c-di-GMP bound PilF159-302

Entity

1. PilF159-302 (polymer, Thiol state: all free), 146 monomers, 16249.39 Da Detail

GSSGEGQKDL KLGELLLQKG WISREALEEA LVEQEKTGDL LGRILVRKGL PEEALYRALA EQKGLEFLES TEGIVPDPSA ALLLLRSDAL RYGAVPIGFQ NGEVEVVLSD PRHKEAVAQL LNRPARFYLA LPQAWEELFR RAYPQK

2. c-di-GMP bound PilF159-302, entity C2E (non-polymer), 690.411 Da

Total weight

16939.8 Da

Max. entity weight

16249.39 Da

Source organism

Thermus thermophilus

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 100.0 %, Completeness: 97.4 %, Completeness (bb): 98.5 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	97.4 % (1677 of 1722)	96.2 % (869 of 903)	98.7 % (660 of 669)	98.7 % (148 of 150)
Backbone	98.5 % (847 of 860)	96.6 % (287 of 297)	99.5 % (423 of 425)	99.3 % (137 of 138)
Sidechain	96.7 % (962 of 995)	96.0 % (582 of 606)	97.9 % (369 of 377)	91.7 % (11 of 12)
Aromatic	97.0 % (97 of 100)	98.0 % (49 of 50)	95.8 % (46 of 48)	100.0 % (2 of 2)
Methyl	97.3 % (181 of 186)	100.0 % (93 of 93)	94.6 % (88 of 93)

1. PilF159-302

GSSGEGQKDL KLGELLLQKG WISREALEEA LVEQEKTGDL LGRILVRKGL PEEALYRALA EQKGLEFLES TEGIVPDPSA ALLLLRSDAL RYGAVPIGFQ NGEVEVVLSD PRHKEAVAQL LNRPARFYLA LPQAWEELFR RAYPQK

Show sample condition

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 318 K, pH 5.8

#	Name	Isotope labeling	Concentration
1	PilF159-302	[U-13C; U-15N]	541 uM
2	D2O	natural abundance	10 %
3	DSS	natural abundance	200 uM
4	Bis-TRIS	natural abundance	50 mM
5	beta-mercaptoethanol	natural abundance	1 %
6	sodium chloride	natural abundance	200 mM
7	c-di-GMP	natural abundance	812 uM

LACS Plot; CA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.02 ppm, Outliers: 1 Detail

LACS Plot; CB

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.02 ppm, Outliers: 1 Detail

LACS Plot; HA

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: 0.04 ppm, Outliers: 1 Detail

LACS Plot; CO

Atom type	Mol. common name	Atom group	Ref. method	Ref. type	Shift ratio
¹³C	DSS	methyl protons	na	indirect	0.2514495
¹H	DSS	methyl protons	internal	direct	1.0
¹⁵N	DSS	methyl protons	na	indirect	0.1013291

Referencing offset: -0.14 ppm, Outliers: 3 Detail

Release date

2019-03-25

Citation

NMR resonance assignments for the GSPII-B domain of the traffic ATPase PilF from Thermus thermophilus in the apo and the c-di-GMP-bound state
Neissner, K., Keller, H., Duchardt-Ferner, E., Hacker, C., Kruse, K., Averhoff, B., Wohnert, J.
Biomol. NMR Assign. (2019), 13, 383-390, PubMed 31432400 , DOI 10.1007/s12104-019-09911-z , Abstract

Entries sharing articles BMRB: 1 entries Detail

BMRB: 27852 released on 2019-03-25
Title NMR resonance assignments for the GSPII-B domain of the traffic ATPase PilF from Thermus thermophilus in the apo and c-di-GMP-bound states

Related entities 1. PilF159-302, : 1 : 3 : 1 : 2 : 2 entities Detail

Experiments performed 14 experiments Detail

1 2D 1H-15N HSQC