BMRBj - BMREntryMaster

Found 1 Document (1.287 seconds)

BMRB: 30772

6XRG

Abl 1b isoform inactive2 state

Authors

Xie, T., Saleh, T., Rossi, P., Kalodimos, C.G.

Assembly

Tyrosine-protein kinase ABL1 (E.C.2.7.10.2)

Entity

1. Tyrosine-protein kinase ABL1 (E.C.2.7.10.2) (polymer), 287 monomers, 33258.64 Da Detail

SPNYDKWEME RTDITMKHKL GEGQYGEVYE GVWKKYSLTV AVKTLKEDTM EVEEFLKEAA VLKEIKHPNL VQLLGVCTRE PPFYIITEFM TYGNLLDYLR ECNRQEVNAV VLLYMATQIS SAMEYLEKKN FIHRDLAARN CLVGENHLVK VADFGLSRLM YGDTYTAHAG AKFPIKWTAP ESLAYNKFSI KSDVWAFGVL LWEIATYGMS PYPGIDLSQV YELLEKDYRM ERPEGCPEKV YELMRACWQW NPSDRPSFAE IHQAFETMFQ ESSISDEVEK ELGKQGV

Formula weight

33258.64 Da

Source organism

Homo sapiens

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 43.2 %, Completeness: 13.4 %, Completeness (bb): 7.1 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C
All	13.4 % (422 of 3155)	12.7 % (228 of 1797)	14.3 % (194 of 1358)
Backbone	7.1 % (101 of 1423)	6.4 % (37 of 578)	7.6 % (64 of 845)
Sidechain	17.8 % (357 of 2003)	15.7 % (191 of 1219)	21.2 % (166 of 784)
Aromatic	15.3 % (53 of 347)	22.0 % (39 of 177)	8.2 % (14 of 170)
Methyl	76.2 % (230 of 302)	75.5 % (114 of 151)	76.8 % (116 of 151)

1. entity 1

Show sample condition

Sample #1

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 283 K, pH 7.7, Details 250 uM [U-100% 13C; U-100% 15N; U-100% 2H] Abl 1b G269E/M309L/T408Y variant, 25 mM sodium phosphate, 75 mM sodium chloride, 2.5 mM beta-mercaptoethanol, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
1	Abl 1b G269E/M309L/T408Y variant	[U-100% 13C; U-100% 15N; U-100% 2H]	250 uM
2	sodium phosphate	natural abundance	25 mM
3	sodium chloride	natural abundance	75 mM
4	beta-mercaptoethanol	natural abundance	2.5 mM

Sample #2

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 283 K, pH 7.7, Details 250 uM N-ILVMAT-FY Abl 1b G269E/M309L/T408Y variant, 25 mM sodium phosphate, 75 mM sodium chloride, 2.5 mM beta-mercaptoethanol, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
5	Abl 1b G269E/M309L/T408Y variant	N-ILVMAT-FY	250 uM
6	sodium phosphate	natural abundance	25 mM
7	sodium chloride	natural abundance	75 mM
8	beta-mercaptoethanol	natural abundance	2.5 mM

Release date

2020-07-29

Citation

Conformational states dynamically populated by a kinase determine its function
Xie, T., Saleh, T., Rossi, P., Kalodimos, C.G.
Science (2020), 370, eabc2754-eabc2754, PubMed 33004676 , DOI 10.1126/science.abc2754 , Abstract

Entries sharing articles BMRB: 2 entries Detail

  BMRB: 30771 released on 2020-07-29
    Title Abl isoform 1b inactive1 state
  BMRB: 30770 released on 2020-07-17
    Title Ablb 1b isoform active state

Related entities 1. Tyrosine-protein kinase ABL1 (E.C.2.7.10.2), : 1 : 299 entities Detail

Interaction partners 1. Tyrosine-protein kinase ABL1 (E.C.2.7.10.2), : 65 interactors Detail

More details for 65 interactors identified by 45 citations

Experiments performed 8 experiments Detail

1 2D 1H-13C HSQC aromatic

Instrument

Bruker AVANCE - na MHz

Sample

State isotropic, Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 283 K, pH 7.7, Details 250 uM N-ILVMAT-FY Abl 1b G269E/M309L/T408Y variant, 25 mM sodium phosphate, 75 mM sodium chloride, 2.5 mM beta-mercaptoethanol, 90% H2O/10% D2O

#	Name	Isotope labeling	Concentration
5	Abl 1b G269E/M309L/T408Y variant	N-ILVMAT-FY	250 uM
6	sodium phosphate	natural abundance	25 mM
7	sodium chloride	natural abundance	75 mM
8	beta-mercaptoethanol	natural abundance	2.5 mM

2 2D 1H-13C HMQC

Instrument

Bruker AVANCE - na MHz

Sample

#	Name	Isotope labeling	Concentration
5	Abl 1b G269E/M309L/T408Y variant	N-ILVMAT-FY	250 uM
6	sodium phosphate	natural abundance	25 mM
7	sodium chloride	natural abundance	75 mM
8	beta-mercaptoethanol	natural abundance	2.5 mM

3 2D 1H-15N TROSY

Instrument

Bruker AVANCE - 850 MHz

Sample

#	Name	Isotope labeling	Concentration
5	Abl 1b G269E/M309L/T408Y variant	N-ILVMAT-FY	250 uM
6	sodium phosphate	natural abundance	25 mM
7	sodium chloride	natural abundance	75 mM
8	beta-mercaptoethanol	natural abundance	2.5 mM

4 3D CaCmHm_sofastNOESY

Instrument

Bruker AVANCE - na MHz

Sample

#	Name	Isotope labeling	Concentration
5	Abl 1b G269E/M309L/T408Y variant	N-ILVMAT-FY	250 uM
6	sodium phosphate	natural abundance	25 mM
7	sodium chloride	natural abundance	75 mM
8	beta-mercaptoethanol	natural abundance	2.5 mM

5 3D CCH NOESY

Instrument

Bruker AVANCE - na MHz

Sample

#	Name	Isotope labeling	Concentration
5	Abl 1b G269E/M309L/T408Y variant	N-ILVMAT-FY	250 uM
6	sodium phosphate	natural abundance	25 mM
7	sodium chloride	natural abundance	75 mM
8	beta-mercaptoethanol	natural abundance	2.5 mM

6 3D 1H-13C NOESY aromatic

Instrument

Bruker AVANCE - na MHz

Sample

#	Name	Isotope labeling	Concentration
5	Abl 1b G269E/M309L/T408Y variant	N-ILVMAT-FY	250 uM
6	sodium phosphate	natural abundance	25 mM
7	sodium chloride	natural abundance	75 mM
8	beta-mercaptoethanol	natural abundance	2.5 mM

7 3D 1H-13C NOESY aliphatic

Instrument

Bruker AVANCE - na MHz

Sample

#	Name	Isotope labeling	Concentration
5	Abl 1b G269E/M309L/T408Y variant	N-ILVMAT-FY	250 uM
6	sodium phosphate	natural abundance	25 mM
7	sodium chloride	natural abundance	75 mM
8	beta-mercaptoethanol	natural abundance	2.5 mM

8 3D 1H-15N NOESY

Instrument

Bruker AVANCE - 850 MHz

Sample

#	Name	Isotope labeling	Concentration
5	Abl 1b G269E/M309L/T408Y variant	N-ILVMAT-FY	250 uM
6	sodium phosphate	natural abundance	25 mM
7	sodium chloride	natural abundance	75 mM
8	beta-mercaptoethanol	natural abundance	2.5 mM

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr30772_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr30772_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	553		37.3 (chain: 1, length: 287)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 287, Sequence coverage: 37.3%
- Total number of assignments
  - ¹H chemical shifts: 414
  - ¹³C chemical shifts: 139
- Completeness of assignments
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Keywords ABL isoform 1b, ONCOPROTEIN

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Found 1 Document (1.287 seconds)

BMRB: 30772

Sample #1

Sample #2

Entries sharing articles BMRB: 2 entries Detail

Related entities 1. Tyrosine-protein kinase ABL1 (E.C.2.7.10.2), : 1 : 299 entities Detail

Interaction partners 1. Tyrosine-protein kinase ABL1 (E.C.2.7.10.2), : 65 interactors Detail

Experiments performed 8 experiments Detail

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Chemical shift validation 3 contents Detail