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Found 1 Document (1.759 seconds)

BMRB: 34573

7AVA

Solution structure of the fluorogen-activating protein FAST in the apo state

Authors

Mineev, K.S., Goncharuk, S.A., Baranov, M.S.

Assembly

FAST

Entity

1. FAST (polymer, Thiol state: not present), 138 monomers, 15225.97 Da Detail

MEHVAFGSED IENTLAKMDD GQLDGLAFGA IQLDGDGNIL QYNAAEGDIT GRDPKQVIGK NFFKDVAPGT DSPEFYGKFK EGVASGNLNT MFEWMIPTSR GPTKVKVHMK KALSGDSYWV FVKRVKLAAA LEHHHHHH

Formula weight

15225.97 Da

Source organism

synthetic construct

Exptl. method

solution NMR

Data set

assigned_chemical_shifts

Chem. Shift Complete

Sequence coverage: 97.1 %, Completeness: 91.2 %, Completeness (bb): 90.6 % Detail

Polymer type: polypeptide(L)

	Total	¹H	¹³C	¹⁵N
All	91.2 % (1449 of 1588)	93.8 % (769 of 820)	89.7 % (556 of 620)	83.8 % (124 of 148)
Backbone	90.6 % (741 of 818)	90.6 % (259 of 286)	92.7 % (370 of 399)	84.2 % (112 of 133)
Sidechain	92.7 % (828 of 893)	95.5 % (510 of 534)	89.0 % (306 of 344)	80.0 % (12 of 15)
Aromatic	71.2 % (114 of 160)	85.0 % (68 of 80)	56.4 % (44 of 78)	100.0 % (2 of 2)
Methyl	100.0 % (132 of 132)	100.0 % (66 of 66)	100.0 % (66 of 66)

1. entity 1

MEHVAFGSED IENTLAKMDD GQLDGLAFGA IQLDGDGNIL QYNAAEGDIT GRDPKQVIGK NFFKDVAPGT DSPEFYGKFK EGVASGNLNT MFEWMIPTSR GPTKVKVHMK KALSGDSYWV FVKRVKLAAA LEHHHHHH

Show sample condition

Sample #1

Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 318 K, pH 7.0 (±0.02), Details 1 mM [U-13C; U-15N] FAST, 20 mM sodium phosphate, 20 mM sodium chloride, 0.1 % sodium azide, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	FAST	[U-13C; U-15N]	1 (±0.1) mM
2	sodium phosphate	natural abundance	20 (±0.1) mM
3	sodium chloride	natural abundance	20 (±0.1) mM
4	sodium azide	natural abundance	0.1 %

Sample #2

Solvent system 100% D2O, Pressure 1 atm, Temperature 318 K, pH 7.0 (±0.02), Details 1 mM [U-13C; U-15N] FAST, 20 mM sodium phosphate, 20 mM sodium chloride, 0.1 % sodium azide, 100% D2O

#	Name	Isotope labeling	Concentration
5	FAST	[U-13C; U-15N]	1 (±0.1) mM
6	sodium phosphate	natural abundance	20 (±0.1) mM
7	sodium chloride	natural abundance	20 (±0.1) mM
8	sodium azide	natural abundance	0.1 %

Release date

2020-11-30

Citation

NanoFAST: structure-based design of a small fluorogen-activating protein with only 98 amino acids
Mineev, K.S., Goncharuk, S.A., Goncharuk, M.V., Povarova, N.V., Sokolov, A.I., Baleeva, N.S., Smirnov, A.Y., Myasnyanko, I.N., Ruchkin, D.A., Bukhdruker, S., Remeeva, A., Mishin, A., Borshchevskiy, V., Gordeliy, V., Arseniev, A.S., Gorbachev, D.A., Gavrikov, A.S., Mishin, A.S., Baranov, M.S.
Chem. Sci. (2021), 12, 6719-6725, PubMed 34040747 , DOI 10.1039/d1sc01454d , Abstract

Entries sharing articles BMRB: 1 entries Detail

BMRB: 34572 released on 2021-04-19
Title Solution structure of the fluorogen-activating protein FAST in complex with the ligand N871b

Related entities 1. FAST, : 1 : 2 : 1 : 100 entities Detail

Experiments performed 12 experiments Detail

1 2D 1H-13C HSQC aromatic

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 95% H2O/5% D2O, Pressure 1 atm, Temperature 318 K, pH 7.0 (±0.02), Details 1 mM [U-13C; U-15N] FAST, 20 mM sodium phosphate, 20 mM sodium chloride, 0.1 % sodium azide, 95% H2O/5% D2O

#	Name	Isotope labeling	Concentration
1	FAST	[U-13C; U-15N]	1 (±0.1) mM
2	sodium phosphate	natural abundance	20 (±0.1) mM
3	sodium chloride	natural abundance	20 (±0.1) mM
4	sodium azide	natural abundance	0.1 %

2 2D 1H-15N HSQC

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	FAST	[U-13C; U-15N]	1 (±0.1) mM
2	sodium phosphate	natural abundance	20 (±0.1) mM
3	sodium chloride	natural abundance	20 (±0.1) mM
4	sodium azide	natural abundance	0.1 %

3 3D HNCO

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	FAST	[U-13C; U-15N]	1 (±0.1) mM
2	sodium phosphate	natural abundance	20 (±0.1) mM
3	sodium chloride	natural abundance	20 (±0.1) mM
4	sodium azide	natural abundance	0.1 %

4 3D HNCACB

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	FAST	[U-13C; U-15N]	1 (±0.1) mM
2	sodium phosphate	natural abundance	20 (±0.1) mM
3	sodium chloride	natural abundance	20 (±0.1) mM
4	sodium azide	natural abundance	0.1 %

5 3D HNCA

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	FAST	[U-13C; U-15N]	1 (±0.1) mM
2	sodium phosphate	natural abundance	20 (±0.1) mM
3	sodium chloride	natural abundance	20 (±0.1) mM
4	sodium azide	natural abundance	0.1 %

6 3D HN(CO)CA

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	FAST	[U-13C; U-15N]	1 (±0.1) mM
2	sodium phosphate	natural abundance	20 (±0.1) mM
3	sodium chloride	natural abundance	20 (±0.1) mM
4	sodium azide	natural abundance	0.1 %

7 3D 1H-15N NOESY

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	FAST	[U-13C; U-15N]	1 (±0.1) mM
2	sodium phosphate	natural abundance	20 (±0.1) mM
3	sodium chloride	natural abundance	20 (±0.1) mM
4	sodium azide	natural abundance	0.1 %

8 3D 1H-13C NOESY aliphatic

Instrument

Bruker AVANCE III - 600 MHz

Sample

State isotropic, Solvent system 100% D2O, Pressure 1 atm, Temperature 318 K, pH 7.0 (±0.02), Details 1 mM [U-13C; U-15N] FAST, 20 mM sodium phosphate, 20 mM sodium chloride, 0.1 % sodium azide, 100% D2O

#	Name	Isotope labeling	Concentration
5	FAST	[U-13C; U-15N]	1 (±0.1) mM
6	sodium phosphate	natural abundance	20 (±0.1) mM
7	sodium chloride	natural abundance	20 (±0.1) mM
8	sodium azide	natural abundance	0.1 %

9 3D 1H-13C NOESY aromatic

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
5	FAST	[U-13C; U-15N]	1 (±0.1) mM
6	sodium phosphate	natural abundance	20 (±0.1) mM
7	sodium chloride	natural abundance	20 (±0.1) mM
8	sodium azide	natural abundance	0.1 %

10 3D HNHA

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
1	FAST	[U-13C; U-15N]	1 (±0.1) mM
2	sodium phosphate	natural abundance	20 (±0.1) mM
3	sodium chloride	natural abundance	20 (±0.1) mM
4	sodium azide	natural abundance	0.1 %

11 3D HCCH-TOCSY

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
5	FAST	[U-13C; U-15N]	1 (±0.1) mM
6	sodium phosphate	natural abundance	20 (±0.1) mM
7	sodium chloride	natural abundance	20 (±0.1) mM
8	sodium azide	natural abundance	0.1 %

12 3D HCCH-COSY

Instrument

Bruker AVANCE III - 600 MHz

Sample

#	Name	Isotope labeling	Concentration
5	FAST	[U-13C; U-15N]	1 (±0.1) mM
6	sodium phosphate	natural abundance	20 (±0.1) mM
7	sodium chloride	natural abundance	20 (±0.1) mM
8	sodium azide	natural abundance	0.1 %

Chemical shift validation 3 contents Detail

Properties

Input source #1: Assigned chemical shifts - Assigned chemical shifts	bmr34573_3.str
Diamagnetism of the molecular assembly	True (excluding Oxygen atoms)
Whether the assembly has a disulfide bond	None
Whether the assembly has a other bond	None
Whether the assembly contains a cyclic polymer	None
Overall data processing status	Warning

Disulfide bonds

None

Other bonds (neither disulfide, covalent nor hydrogen bonds, e.g. Zinc–sulphur bond)

None

Non-standard residues

None

Content subtype: bmr34573_3.str

#	Content subtype	Saveframe	Status	# of rows	Experiment type	Sequence coverage (%)
1	Assigned chemical shifts	assigned_chemical_shifts_1	Warning	1574		97.1 (chain: 1, length: 138)
1	Chemical shift references	chem_shift_reference_1	OK	3		No information

Assigned chemical shifts

Saveframe: assigned_chemical_shifts_1
- Status: Warning
- Sequence coverage of experimental data
  - Entity_assembly_ID: 1, Chain length: 138, Sequence coverage: 97.1%
- Total number of assignments
  - ¹H chemical shifts: 904
  - ¹³C chemical shifts: 552
  - ¹⁵N chemical shifts: 118
- Completeness of assignments
  - Entity_assemble_ID: 1
- Peptide bond of PRO
- Tautomeric state of HIS
- Rotameric state of ILE , LEU, and VAL
- Histogram of normalized assigned chemical shifts
- Random coil index and derived parameters (S² and NMR RMSD)
  - Chain_ID: 1

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	820	764	93.2
¹³C chemical shifts	620	552	89.0
¹⁵N chemical shifts	148	118	79.7

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	286	254	88.8
¹³C chemical shifts	276	246	89.1
¹⁵N chemical shifts	133	106	79.7

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	534	510	95.5
¹³C chemical shifts	344	306	89.0
¹⁵N chemical shifts	15	12	80.0

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	71	70	98.6
¹³C chemical shifts	71	70	98.6

Atom group	# of target shifts	# of assigned shifts	Completeness (%)
¹H chemical shifts	80	68	85.0
¹³C chemical shifts	78	44	56.4
¹⁵N chemical shifts	2	2	100.0

Keywords FLUORESCENT PROTEIN, Fluorogen-activating protein PAS domain

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Found 1 Document (1.759 seconds)

BMRB: 34573

Sample #1

Sample #2

Entries sharing articles BMRB: 1 entries Detail

Related entities 1. FAST, : 1 : 2 : 1 : 100 entities Detail

Experiments performed 12 experiments Detail

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Chemical shift validation 3 contents Detail