Filt_Robot (stand alone: no spectrum viewer)

A quick tool for fully automated peak identification and noise filtration using Deep Neural Networks

module_view

New function: Noise/Signal recognition by Deep Neural Networks

img2
Auto-pick only
img2
After noise filter

Requirements

Standard Linux OS 64-bit(CentOS, Fedora, Ubuntu)
CNTK ver. 2.0 from Microsoft [link]
OpenMPI ver. 1.10.x [link]
csh, Tcl/Tk 8.3 or newer
spectrum data in NMR-View format

Download

Manual English (pdf)
Filt_Robot_v2.01.08.tar.gz (7,61 MB)
CNN training data and scripts (for CNTK2.0) [link]
Updated:March 13, 2018

Demo data 1: CpR74A (single chain 74aa protein)

bmr16647 [link]
NMR-Pipe scripts for NMRView format conversion [link] (2.5MB)
processed data [link] (320.3MB)
MagRO data sets [link] (702.7MB) Updated:March 13, 2018

Demo data 2: Lamina G465D (single chain 147aa protein)

MagRO data sets [link] (2.26GB) Updated:March 13, 2018

A quick instrcutions for CNN noise filter [link]
VirtualBox image for English Keyboard(ova) [link](3.0GB) Updated:March 29, 2018
VirtualBox image for Japanese Keyboard(ova) [link](3.0GB) Updated:March 29, 2018
including CNTK, OpenMPI username: nmruser pwd: protein
Note: Please change the password immediately after login.

Please contact us: nk-magro2016 at protein.osaka-u.ac.jp at->@