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Backbone 1H, 13C, and 15N Chemical Shift Assignments for RPT1 of hSNF5 and SWIRM of BAF155
Authors
Han, J., Kim, I., Suh, J., Lee, W.
Assembly
RPT1 with SWRIM heterodimer
Entity
1. RPT1 (polymer, Thiol state: all free), 88 monomers, 10012.18 Da Detail

HDPAVIHENA SQPEVLVPIR LDMEIDGQKL RDAFTWNMNE KLMTPEMFSE ILCDDLDLNP LTFVPAIASA IRQQIESYPT DSILEDQS


2. SWIRM (polymer, Thiol state: all free), 98 monomers, 11598.16 Da Detail

IIIPSYASWF DYNCIHVIER RALPEFFNGK NKSKTPEIYL AYRNFMIDTY RLNPQEYLTS TACRRNLTGD VCAVMRVHAF LEQWGLVNYQ VDPESRPM


Total weight
21610.34 Da
Max. entity weight
11598.16 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 46.2 %, Completeness: 15.3 %, Completeness (bb): 29.5 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All15.3 % (342 of 2232) 8.5 % (98 of 1156)19.3 % (168 of 870)36.9 % (76 of 206)
Backbone29.5 % (322 of 1090)22.6 % (82 of 363)29.6 % (164 of 554)43.9 % (76 of 173)
Sidechain 7.6 % (101 of 1324) 2.1 % (17 of 793)16.9 % (84 of 498) 0.0 % (0 of 33)
Aromatic 0.0 % (0 of 196) 0.0 % (0 of 98) 0.0 % (0 of 95) 0.0 % (0 of 3)
Methyl 4.4 % (9 of 206) 1.9 % (2 of 103) 6.8 % (7 of 103)

1. RPT1

HDPAVIHENA SQPEVLVPIR LDMEIDGQKL RDAFTWNMNE KLMTPEMFSE ILCDDLDLNP LTFVPAIASA IRQQIESYPT DSILEDQS

2. SWIRM

IIIPSYASWF DYNCIHVIER RALPEFFNGK NKSKTPEIYL AYRNFMIDTY RLNPQEYLTS TACRRNLTGD VCAVMRVHAF LEQWGLVNYQ VDPESRPM

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0


#NameIsotope labelingTypeConcentration
1RPT1[U-99% 13C; U-99% 15N]0.5 mM
2SWIRMnatural abundance0.5 mM
3HEPESnatural abundance10 mM
4sodium chloridenatural abundance100 mM
5DTTnatural abundance2 mM

Release date
2020-01-21
Citation
A Coil-to-Helix Transition Serves as a Binding Motif for hSNF5 and BAF155 Interaction
Han, J., Kim, I., Park, J.H., Yun, J.H., Joo, K., Kim, T., Park, G.Y., Ryu, K.S., Ko, Y.J., Mizutani, K., Park, S.Y., Seong, R.H., Lee, J., Suh, J.Y., Lee, W.
Int. J. Mol. Sci. (2020), 21, 2452-2452, PubMed 32244797 , DOI 10.3390/ijms21072452 ,
Entries sharing articles BMRB: 2 entries Detail
  BMRB: 28063 released on 2020-01-21
    Title Backbone 1H, 13C, and 15N Chemical shift Assignments for SWIRM domain of BAF155 and RPT1 of hSNF5
  BMRB: 28064 released on 2020-01-21
    Title Solution structure of hSNF5 RPT1 domain
Related entities 1. RPT1, : 1 : 8 : 4 : 26 entities Detail
Related entities 2. SWIRM, : 3 : 50 entities Detail
Interaction partners 1. RPT1, : 17 interactors Detail
Experiments performed 3 experiments Detail
Chemical shift validation 4 contents Detail