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Solution structure of hSNF5 RPT1 domain
Authors
Han, J., Kim, I., Suh, J., Lee, W.
Assembly
RPT1 monomer
Entity
1. RPT1 monomer (polymer, Thiol state: all free), 88 monomers, 10012.18 Da Detail

HDPAVIHENA SQPEVLVPIR LDMEIDGQKL RDAFTWNMNE KLMTPEMFSE ILCDDLDLNP LTFVPAIASA IRQQIESYPT DSILEDQS


Formula weight
10012.18 Da
Source organism
Homo sapiens
Exptl. method
solution NMR
Refine. method
simulated annealing
Data set
assigned_chemical_shifts
Chem. Shift Complete
Sequence coverage: 98.9 %, Completeness: 32.2 %, Completeness (bb): 63.8 % Detail

Polymer type: polypeptide(L)

Total1H13C15N
All32.2 % (331 of 1028)15.4 % (82 of 533)42.6 % (171 of 401)83.0 % (78 of 94)
Backbone63.8 % (328 of 514)46.5 % (79 of 170)65.0 % (171 of 263)96.3 % (78 of 81)
Sidechain14.6 % (88 of 601) 0.8 % (3 of 363)37.8 % (85 of 225) 0.0 % (0 of 13)
Aromatic 1.7 % (1 of 58) 3.4 % (1 of 29) 0.0 % (0 of 28) 0.0 % (0 of 1)
Methyl 5.8 % (6 of 104) 0.0 % (0 of 52)11.5 % (6 of 52)

1. RPT1

HDPAVIHENA SQPEVLVPIR LDMEIDGQKL RDAFTWNMNE KLMTPEMFSE ILCDDLDLNP LTFVPAIASA IRQQIESYPT DSILEDQS

Sample

Solvent system 90% H2O/10% D2O, Pressure 1 atm, Temperature 298 K, pH 7.0


#NameIsotope labelingTypeConcentration
1RPT1[U-99% 13C; U-99% 15N]0.5 (±0.05) mM
2HEPESnatural abundance10 mM
3sodium chloridenatural abundance100 mM
4DTTnatural abundance2 mM

Protein Blocks Logo
Calculated from 20 models in PDB: 6LZP, Strand ID: A Detail


Release date
2020-01-21
Citation
A Coil-to-Helix Transition Serves as a Binding Motif for hSNF5 and BAF155 Interaction
Han, J., Kim, I., Park, J.H., Yun, J.H., Joo, K., Kim, T., Park, G.Y., Ryu, K.S., Ko, Y.J., Mizutani, K., Park, S.Y., Seong, R.H., Lee, J., Suh, J.Y., Lee, W.
Int. J. Mol. Sci. (2020), 21, 2452-2452, PubMed 32244797 , DOI 10.3390/ijms21072452 ,
Entries sharing articles BMRB: 2 entries Detail
  BMRB: 28062 released on 2020-01-21
    Title Backbone 1H, 13C, and 15N Chemical Shift Assignments for RPT1 of hSNF5 and SWIRM of BAF155
  BMRB: 28063 released on 2020-01-21
    Title Backbone 1H, 13C, and 15N Chemical shift Assignments for SWIRM domain of BAF155 and RPT1 of hSNF5
Related entities 1. RPT1 monomer, : 1 : 8 : 4 : 26 entities Detail
Interaction partners 1. RPT1 monomer, : 17 interactors Detail
Experiments performed 6 experiments Detail
Chemical shift validation 3 contents Detail