BMRBj - Home_simple

Deposition
- BMRB annotation services
- wwPDB OneDep (PDB-BMRB)
- BMRBdep (BMRB Only)
- SMSDep
- Tutorial for deposition
- Submission manual
- FAQ
- Related Tools
- Standards and Data Formats
Search
- Integrated search services
- Search BMRB and more
- Alternative search services
- Search BMRB/RDF with SPARQL
- Search BMRB/XML with XQuery
- Comprehensive SPARQL endpoints
- RDF Portal
- Secondary database
- Multiple Protein Model Search
Archives
- Standard data
- NMR-STAR v3.1
- BMRB/XML (complete)
- BMRB/XML (noatom)
- BMRB/RDF (RDF/XML)
- BMRB/RDF (N-Triples)
- BMRB/JSON (noatom)
- Associated data
- NMR-STAR v2.1
- NMR-STAR (BMRB+PDB)
- Combined NMR restraints (NMR-STAR v3.2 or NEF)
- Validation reports
- AVS validation reports
- LACS validation reports
- SPARTA validation reports
- Completeness of assigned chemical shifts
- MolProbity structure validation reports
- Chemical shift validation reports
- Derived data
- CSI (Chemical Shift Index)
- CS-Rosetta structures
- Protein Blocks annotation
  - NMR structure
  - Related X-ray structure
- BLAST Output (XML)
  - haystack: BLAST (general sequence databases)
  - haystack: BMRB (bmrbaa)
  - haystack: PDB (pdbaa)
  - haystack: EMDB (emdbaa)
  - haystack: Swiss-Prot (uniprotkb)
  - haystack: BMRB (bmrbnt)
  - haystack: PDB (pdbnt)
  - haystack: EMDB (emdbnt)
- BLAST database and FASTA sequences
- Divided FASTA sequences
- Derived data accessed by PDB ID
- DSSP
- Watson Crick basepairing
- Back calculated chemical shifts
- All-atom structure validation
- Raw data
- Timedomain data (BMRB entries)
- nmrML FID (metabolomics entries)
Mirrors
- BMRB mirror sites
- BMRBj, Osaka University
- BMRB, University of Connecticut
- Collaborators
- Protein Data Bank Japan
- Worldwide Protein Data Bank
Language
- English
- Japanese
About

Search

Query history

Everything
Sequence

Release date from to

Authors

Polymers

Ligands

Organisms

Resources

Search for primary databases

BMRB PDB EMDB Swiss-Prot Metabolomics Ligand Expo

Search for subsidiary databases

PubMed BLAST IntAct PubChem

Display

Hits per page

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Statistics

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Maximum hits

100 1000 10000 Unlimited

Default conjunction operator

Omni-box

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Search filter

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Sequence search (BLAST)

E-value

0.0001 0.01 1.0 100.0

Query sequence coverage

80 % 60 % 40 % 20 %

Miscellaneous

The number of previewed publications

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Completeness of assigned chemical shift

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Sequence chart about top aligned regions

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Sequence chart about interacting regions

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Hit context with highlight

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Link destinations for BMRB, PDB and EMDB

Time zone dependent Asia Europa America